Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Smarca1Q6PGB8 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Smarca1Q6PGB8 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Smarca1Q6PGB8 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Smarca1Q6PGB8 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Smarca1Q6PGB8 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Smarca1Q6PGB8 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Smarca1Q6PGB8 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Smarca1Q6PGB8 Tgds-204ENSMUST00000228543 1594 ntBASIC20■□□□□ 0.79
Smarca1Q6PGB8 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Smarca1Q6PGB8 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20■□□□□ 0.79
Smarca1Q6PGB8 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Smarca1Q6PGB8 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Smarca1Q6PGB8 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Smarca1Q6PGB8 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Smarca1Q6PGB8 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC20■□□□□ 0.79
Smarca1Q6PGB8 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Smarca1Q6PGB8 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Smarca1Q6PGB8 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Smarca1Q6PGB8 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Gm27275-201ENSMUST00000184318 272 ntBASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Smarca1Q6PGB8 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Smarca1Q6PGB8 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Gm22325-201ENSMUST00000158904 308 ntBASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Smarca1Q6PGB8 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.95■□□□□ 0.79
Smarca1Q6PGB8 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.95■□□□□ 0.78
Smarca1Q6PGB8 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.94■□□□□ 0.78
Smarca1Q6PGB8 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Smarca1Q6PGB8 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms