Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC16.76■□□□□ 0.27
ShhQ62226 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC16.76■□□□□ 0.27
ShhQ62226 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ShhQ62226 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
ShhQ62226 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
ShhQ62226 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC16.75■□□□□ 0.27
ShhQ62226 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC16.75■□□□□ 0.27
ShhQ62226 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC16.75■□□□□ 0.27
ShhQ62226 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
ShhQ62226 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 AC131586.2-201ENSMUST00000228370 1512 ntBASIC16.75■□□□□ 0.27
ShhQ62226 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
ShhQ62226 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ShhQ62226 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ShhQ62226 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
ShhQ62226 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
ShhQ62226 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
ShhQ62226 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Gm19094-201ENSMUST00000209791 1246 ntBASIC16.74■□□□□ 0.27
ShhQ62226 AC153881.2-201ENSMUST00000214877 204 ntBASIC16.74■□□□□ 0.27
ShhQ62226 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
ShhQ62226 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ShhQ62226 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Dmtn-210ENSMUST00000228824 2377 ntBASIC16.73■□□□□ 0.27
ShhQ62226 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ShhQ62226 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Dio3-201ENSMUST00000097228 1449 ntBASIC16.73■□□□□ 0.27
ShhQ62226 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ShhQ62226 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Gm15378-201ENSMUST00000121894 207 ntBASIC16.73■□□□□ 0.27
ShhQ62226 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 Gm9484-201ENSMUST00000195892 1159 ntBASIC16.73■□□□□ 0.27
ShhQ62226 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.73■□□□□ 0.27
ShhQ62226 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC16.73■□□□□ 0.27
ShhQ62226 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
ShhQ62226 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
ShhQ62226 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ShhQ62226 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ShhQ62226 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
ShhQ62226 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ShhQ62226 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC16.72■□□□□ 0.27
ShhQ62226 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.72■□□□□ 0.27
ShhQ62226 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ShhQ62226 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
ShhQ62226 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC16.72■□□□□ 0.27
ShhQ62226 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.72■□□□□ 0.27
ShhQ62226 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
ShhQ62226 Gm42922-201ENSMUST00000195887 2078 ntBASIC16.72■□□□□ 0.27
ShhQ62226 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ShhQ62226 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ShhQ62226 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms