Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col11a1Q61245 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col11a1Q61245 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col11a1Q61245 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col11a1Q61245 Gm13401-201ENSMUST00000117074 291 ntBASIC20.33■□□□□ 0.85
Col11a1Q61245 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Col11a1Q61245 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col11a1Q61245 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col11a1Q61245 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col11a1Q61245 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Gm11950-201ENSMUST00000121615 838 ntBASIC20.32■□□□□ 0.84
Col11a1Q61245 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC20.32■□□□□ 0.84
Col11a1Q61245 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Col11a1Q61245 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.32■□□□□ 0.84
Col11a1Q61245 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Col11a1Q61245 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC20.32■□□□□ 0.84
Col11a1Q61245 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Col11a1Q61245 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col11a1Q61245 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col11a1Q61245 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col11a1Q61245 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.31■□□□□ 0.84
Col11a1Q61245 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
Col11a1Q61245 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col11a1Q61245 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col11a1Q61245 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col11a1Q61245 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC20.31■□□□□ 0.84
Col11a1Q61245 Gm9731-201ENSMUST00000209480 747 ntBASIC20.31■□□□□ 0.84
Col11a1Q61245 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Col11a1Q61245 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Col11a1Q61245 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC20.3■□□□□ 0.84
Col11a1Q61245 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col11a1Q61245 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.29■□□□□ 0.84
Col11a1Q61245 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col11a1Q61245 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col11a1Q61245 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Col11a1Q61245 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Col11a1Q61245 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.29■□□□□ 0.84
Col11a1Q61245 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col11a1Q61245 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col11a1Q61245 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC20.29■□□□□ 0.84
Col11a1Q61245 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col11a1Q61245 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col11a1Q61245 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col11a1Q61245 Mzt1-203ENSMUST00000227948 952 ntBASIC20.28■□□□□ 0.84
Col11a1Q61245 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col11a1Q61245 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col11a1Q61245 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col11a1Q61245 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col11a1Q61245 Gm24841-201ENSMUST00000158676 357 ntBASIC20.27■□□□□ 0.84
Col11a1Q61245 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
Col11a1Q61245 Otx2os1-206ENSMUST00000228153 787 ntBASIC20.27■□□□□ 0.84
Col11a1Q61245 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col11a1Q61245 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC20.27■□□□□ 0.84
Col11a1Q61245 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col11a1Q61245 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Col11a1Q61245 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Col11a1Q61245 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Col11a1Q61245 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Col11a1Q61245 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col11a1Q61245 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col11a1Q61245 Gm10418-201ENSMUST00000100943 576 ntBASIC20.26■□□□□ 0.83
Col11a1Q61245 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col11a1Q61245 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col11a1Q61245 Gm18958-201ENSMUST00000174258 762 ntBASIC20.26■□□□□ 0.83
Col11a1Q61245 Gm37025-201ENSMUST00000195159 829 ntBASIC20.26■□□□□ 0.83
Col11a1Q61245 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col11a1Q61245 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col11a1Q61245 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col11a1Q61245 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col11a1Q61245 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col11a1Q61245 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms