Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Gm12085-201ENSMUST00000119263 940 ntBASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Gm10517-202ENSMUST00000192970 758 ntBASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3aQ3ULJ3 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Gm18959-201ENSMUST00000208954 655 ntBASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Upf3aQ3ULJ3 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Gm27463-201ENSMUST00000183569 57 ntBASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Gm21362-201ENSMUST00000194272 928 ntBASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3aQ3ULJ3 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3aQ3ULJ3 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Gm38027-201ENSMUST00000192315 235 ntBASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Upf3aQ3ULJ3 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Gm7856-201ENSMUST00000117514 1493 ntBASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Gm45058-201ENSMUST00000205810 766 ntBASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Gm18032-201ENSMUST00000222541 538 ntBASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Upf3aQ3ULJ3 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Upf3aQ3ULJ3 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms