Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf40Q3U319 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf40Q3U319 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf40Q3U319 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.66■□□□□ 0.58
Rnf40Q3U319 Tgds-204ENSMUST00000228543 1594 ntBASIC18.66■□□□□ 0.58
Rnf40Q3U319 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf40Q3U319 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf40Q3U319 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf40Q3U319 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rnf40Q3U319 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Rnf40Q3U319 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.65■□□□□ 0.58
Rnf40Q3U319 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rnf40Q3U319 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
Rnf40Q3U319 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.64■□□□□ 0.57
Rnf40Q3U319 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rnf40Q3U319 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rnf40Q3U319 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.63■□□□□ 0.57
Rnf40Q3U319 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rnf40Q3U319 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rnf40Q3U319 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rnf40Q3U319 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf40Q3U319 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf40Q3U319 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf40Q3U319 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf40Q3U319 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms