Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Gm7370-201ENSMUST00000219471 767 ntBASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
Ddb1Q3U1J4 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
Ddb1Q3U1J4 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Ddb1Q3U1J4 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Ddb1Q3U1J4 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC22.98■■□□□ 1.27
Ddb1Q3U1J4 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Ddb1Q3U1J4 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Gm17808-201ENSMUST00000200859 894 ntBASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Ddb1Q3U1J4 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Mir1668-201ENSMUST00000184114 107 ntBASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddb1Q3U1J4 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddb1Q3U1J4 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddb1Q3U1J4 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Ddb1Q3U1J4 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddb1Q3U1J4 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddb1Q3U1J4 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddb1Q3U1J4 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddb1Q3U1J4 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddb1Q3U1J4 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Ddb1Q3U1J4 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Ddb1Q3U1J4 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Ddb1Q3U1J4 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC22.94■■□□□ 1.26
Ddb1Q3U1J4 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Ddb1Q3U1J4 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
Ddb1Q3U1J4 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Gm38345-201ENSMUST00000192635 1748 ntBASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Gm43006-201ENSMUST00000197702 1602 ntBASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddb1Q3U1J4 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Spsb2-203ENSMUST00000112473 1322 ntBASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
Ddb1Q3U1J4 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Gm34220-201ENSMUST00000223001 2709 ntBASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddb1Q3U1J4 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms