Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.69■□□□□ 0.42
Col9a1Q05722 AC154532.1-201ENSMUST00000227860 965 ntBASIC17.69■□□□□ 0.42
Col9a1Q05722 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col9a1Q05722 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col9a1Q05722 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col9a1Q05722 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col9a1Q05722 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.68■□□□□ 0.42
Col9a1Q05722 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col9a1Q05722 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Col9a1Q05722 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col9a1Q05722 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC17.68■□□□□ 0.42
Col9a1Q05722 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.68■□□□□ 0.42
Col9a1Q05722 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
Col9a1Q05722 Gm27397-201ENSMUST00000184997 107 ntBASIC17.68■□□□□ 0.42
Col9a1Q05722 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Col9a1Q05722 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col9a1Q05722 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col9a1Q05722 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col9a1Q05722 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Col9a1Q05722 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col9a1Q05722 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Col9a1Q05722 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.67■□□□□ 0.42
Col9a1Q05722 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC17.67■□□□□ 0.42
Col9a1Q05722 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.67■□□□□ 0.42
Col9a1Q05722 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.67■□□□□ 0.42
Col9a1Q05722 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col9a1Q05722 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col9a1Q05722 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col9a1Q05722 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Gm24513-201ENSMUST00000174964 138 ntBASIC17.66■□□□□ 0.42
Col9a1Q05722 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Gm27321-201ENSMUST00000185021 205 ntBASIC17.66■□□□□ 0.42
Col9a1Q05722 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Gm43371-201ENSMUST00000202838 1031 ntBASIC17.66■□□□□ 0.42
Col9a1Q05722 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Wdyhv1-206ENSMUST00000227142 786 ntBASIC17.66■□□□□ 0.42
Col9a1Q05722 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col9a1Q05722 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Col9a1Q05722 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col9a1Q05722 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col9a1Q05722 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col9a1Q05722 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Col9a1Q05722 Olfr129-201ENSMUST00000122318 993 ntBASIC17.65■□□□□ 0.42
Col9a1Q05722 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.65■□□□□ 0.42
Col9a1Q05722 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Col9a1Q05722 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.65■□□□□ 0.42
Col9a1Q05722 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.65■□□□□ 0.42
Col9a1Q05722 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col9a1Q05722 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col9a1Q05722 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col9a1Q05722 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Col9a1Q05722 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Col9a1Q05722 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Gm15467-201ENSMUST00000120582 445 ntBASIC17.64■□□□□ 0.41
Col9a1Q05722 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC17.64■□□□□ 0.41
Col9a1Q05722 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.64■□□□□ 0.41
Col9a1Q05722 Mir6349-201ENSMUST00000184059 97 ntBASIC17.64■□□□□ 0.41
Col9a1Q05722 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.64■□□□□ 0.41
Col9a1Q05722 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.64■□□□□ 0.41
Col9a1Q05722 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.64■□□□□ 0.41
Col9a1Q05722 Gm45328-201ENSMUST00000210942 917 ntBASIC17.64■□□□□ 0.41
Col9a1Q05722 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col9a1Q05722 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms