Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Hmgb1P63158 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.79■□□□□ 0.76
Hmgb1P63158 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Hmgb1P63158 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb1P63158 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Hmgb1P63158 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Hmgb1P63158 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Hmgb1P63158 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.78■□□□□ 0.76
Hmgb1P63158 AV356131-201ENSMUST00000206201 750 ntBASIC19.78■□□□□ 0.76
Hmgb1P63158 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
Hmgb1P63158 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.78■□□□□ 0.76
Hmgb1P63158 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb1P63158 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb1P63158 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.77■□□□□ 0.76
Hmgb1P63158 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb1P63158 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.77■□□□□ 0.76
Hmgb1P63158 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb1P63158 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.77■□□□□ 0.76
Hmgb1P63158 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.77■□□□□ 0.76
Hmgb1P63158 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb1P63158 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb1P63158 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb1P63158 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Hmgb1P63158 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.77■□□□□ 0.76
Hmgb1P63158 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Hmgb1P63158 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb1P63158 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb1P63158 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Hmgb1P63158 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Hmgb1P63158 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.76■□□□□ 0.75
Hmgb1P63158 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb1P63158 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb1P63158 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Hmgb1P63158 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
Hmgb1P63158 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.75■□□□□ 0.75
Hmgb1P63158 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.75■□□□□ 0.75
Hmgb1P63158 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb1P63158 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb1P63158 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb1P63158 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb1P63158 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.74■□□□□ 0.75
Hmgb1P63158 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.74■□□□□ 0.75
Hmgb1P63158 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb1P63158 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb1P63158 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb1P63158 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.74■□□□□ 0.75
Hmgb1P63158 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.74■□□□□ 0.75
Hmgb1P63158 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Hmgb1P63158 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb1P63158 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.73■□□□□ 0.75
Hmgb1P63158 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.73■□□□□ 0.75
Hmgb1P63158 Gm8969-201ENSMUST00000199694 526 ntBASIC19.73■□□□□ 0.75
Hmgb1P63158 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.73■□□□□ 0.75
Hmgb1P63158 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Hmgb1P63158 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Hmgb1P63158 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb1P63158 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb1P63158 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb1P63158 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb1P63158 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms