Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx1P48377 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx1P48377 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Rfx1P48377 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx1P48377 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx1P48377 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx1P48377 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx1P48377 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Rfx1P48377 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx1P48377 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx1P48377 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
Rfx1P48377 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.52■■□□□ 1.04
Rfx1P48377 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC21.52■■□□□ 1.04
Rfx1P48377 Gm43017-201ENSMUST00000198296 752 ntBASIC21.52■■□□□ 1.04
Rfx1P48377 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.52■■□□□ 1.04
Rfx1P48377 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.52■■□□□ 1.04
Rfx1P48377 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Rfx1P48377 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx1P48377 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Rfx1P48377 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Rfx1P48377 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.51■■□□□ 1.03
Rfx1P48377 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Rfx1P48377 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Rfx1P48377 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC21.51■■□□□ 1.03
Rfx1P48377 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Rfx1P48377 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx1P48377 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rfx1P48377 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Rfx1P48377 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Rfx1P48377 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rfx1P48377 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Rfx1P48377 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC21.5■■□□□ 1.03
Rfx1P48377 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rfx1P48377 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.5■■□□□ 1.03
Rfx1P48377 Gm45417-201ENSMUST00000209533 758 ntBASIC21.5■■□□□ 1.03
Rfx1P48377 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rfx1P48377 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.5■■□□□ 1.03
Rfx1P48377 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Rfx1P48377 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
Rfx1P48377 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rfx1P48377 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC21.5■■□□□ 1.03
Rfx1P48377 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx1P48377 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx1P48377 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx1P48377 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC21.49■■□□□ 1.03
Rfx1P48377 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx1P48377 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx1P48377 Gm12821-201ENSMUST00000120022 600 ntBASIC21.49■■□□□ 1.03
Rfx1P48377 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx1P48377 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx1P48377 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC21.49■■□□□ 1.03
Rfx1P48377 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx1P48377 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.48■■□□□ 1.03
Rfx1P48377 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.48■■□□□ 1.03
Rfx1P48377 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.48■■□□□ 1.03
Rfx1P48377 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Rfx1P48377 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx1P48377 Gm37374-201ENSMUST00000194954 1829 ntBASIC21.48■■□□□ 1.03
Rfx1P48377 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx1P48377 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx1P48377 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx1P48377 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx1P48377 Appbp2os-202ENSMUST00000206972 447 ntBASIC21.47■■□□□ 1.03
Rfx1P48377 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Rfx1P48377 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms