Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Msx1P13297 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Msx1P13297 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Msx1P13297 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.06■□□□□ 0.32
Msx1P13297 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.06■□□□□ 0.32
Msx1P13297 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.06■□□□□ 0.32
Msx1P13297 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Msx1P13297 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Msx1P13297 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Msx1P13297 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.05■□□□□ 0.32
Msx1P13297 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Msx1P13297 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Msx1P13297 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Msx1P13297 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
Msx1P13297 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.05■□□□□ 0.32
Msx1P13297 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC17.05■□□□□ 0.32
Msx1P13297 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Msx1P13297 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Msx1P13297 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.05■□□□□ 0.32
Msx1P13297 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Msx1P13297 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Msx1P13297 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Msx1P13297 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.04■□□□□ 0.32
Msx1P13297 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Msx1P13297 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
Msx1P13297 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Gm2399-201ENSMUST00000104944 225 ntBASIC17.04■□□□□ 0.32
Msx1P13297 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Msx1P13297 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.04■□□□□ 0.32
Msx1P13297 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.04■□□□□ 0.32
Msx1P13297 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.04■□□□□ 0.32
Msx1P13297 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Gm9987-201ENSMUST00000069768 567 ntBASIC17.04■□□□□ 0.32
Msx1P13297 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Msx1P13297 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.04■□□□□ 0.32
Msx1P13297 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Msx1P13297 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Msx1P13297 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Msx1P13297 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Msx1P13297 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Msx1P13297 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Msx1P13297 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Msx1P13297 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.03■□□□□ 0.32
Msx1P13297 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.03■□□□□ 0.32
Msx1P13297 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Msx1P13297 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Msx1P13297 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Msx1P13297 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Msx1P13297 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Msx1P13297 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Msx1P13297 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Msx1P13297 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Msx1P13297 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Msx1P13297 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Msx1P13297 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC17.02■□□□□ 0.32
Msx1P13297 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Msx1P13297 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Msx1P13297 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Msx1P13297 Gm8309-201ENSMUST00000206627 1448 ntBASIC17.02■□□□□ 0.31
Msx1P13297 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
Msx1P13297 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Msx1P13297 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Msx1P13297 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
Msx1P13297 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msx1P13297 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms