Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.45■□□□□ 0.7
RaraP11416 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.45■□□□□ 0.7
RaraP11416 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.45■□□□□ 0.7
RaraP11416 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RaraP11416 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
RaraP11416 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.44■□□□□ 0.7
RaraP11416 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.44■□□□□ 0.7
RaraP11416 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
RaraP11416 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RaraP11416 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
RaraP11416 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
RaraP11416 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
RaraP11416 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
RaraP11416 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RaraP11416 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.42■□□□□ 0.7
RaraP11416 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
RaraP11416 Gm18671-201ENSMUST00000214826 683 ntBASIC19.42■□□□□ 0.7
RaraP11416 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.42■□□□□ 0.7
RaraP11416 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RaraP11416 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.41■□□□□ 0.7
RaraP11416 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.41■□□□□ 0.7
RaraP11416 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.41■□□□□ 0.7
RaraP11416 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
RaraP11416 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.41■□□□□ 0.7
RaraP11416 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.41■□□□□ 0.7
RaraP11416 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.41■□□□□ 0.7
RaraP11416 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.41■□□□□ 0.7
RaraP11416 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RaraP11416 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
RaraP11416 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RaraP11416 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
RaraP11416 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.4■□□□□ 0.7
RaraP11416 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.4■□□□□ 0.7
RaraP11416 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.4■□□□□ 0.7
RaraP11416 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.4■□□□□ 0.7
RaraP11416 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RaraP11416 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.39■□□□□ 0.7
RaraP11416 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
RaraP11416 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
RaraP11416 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RaraP11416 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RaraP11416 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms