Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Gm4968-201ENSMUST00000071458 858 ntBASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Chmp6P0C0A3 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Chmp6P0C0A3 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Chmp6P0C0A3 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Chmp6P0C0A3 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Chmp6P0C0A3 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Chmp6P0C0A3 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Chmp6P0C0A3 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.58■□□□□ 0.72
Chmp6P0C0A3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Chmp6P0C0A3 Rab3c-203ENSMUST00000224180 967 ntBASIC19.58■□□□□ 0.72
Chmp6P0C0A3 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Chmp6P0C0A3 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Chmp6P0C0A3 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Chmp6P0C0A3 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Chmp6P0C0A3 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Chmp6P0C0A3 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Gm12441-201ENSMUST00000121806 588 ntBASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Gm26524-201ENSMUST00000192339 390 ntBASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.57■□□□□ 0.72
Chmp6P0C0A3 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Chmp6P0C0A3 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Chmp6P0C0A3 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Chmp6P0C0A3 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Chmp6P0C0A3 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms