Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lmx1bO88609 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lmx1bO88609 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lmx1bO88609 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Lmx1bO88609 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.28■□□□□ 0.2
Lmx1bO88609 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.28■□□□□ 0.2
Lmx1bO88609 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC16.28■□□□□ 0.2
Lmx1bO88609 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.28■□□□□ 0.2
Lmx1bO88609 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Lmx1bO88609 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Lmx1bO88609 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Lmx1bO88609 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Lmx1bO88609 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.28■□□□□ 0.2
Lmx1bO88609 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Lmx1bO88609 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lmx1bO88609 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Lmx1bO88609 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.27■□□□□ 0.2
Lmx1bO88609 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Gm22325-201ENSMUST00000158904 308 ntBASIC16.27■□□□□ 0.2
Lmx1bO88609 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Mir7071-201ENSMUST00000184847 69 ntBASIC16.27■□□□□ 0.2
Lmx1bO88609 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC16.27■□□□□ 0.2
Lmx1bO88609 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Lmx1bO88609 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Lmx1bO88609 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Lmx1bO88609 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Lmx1bO88609 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC16.26■□□□□ 0.19
Lmx1bO88609 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC16.26■□□□□ 0.19
Lmx1bO88609 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.26■□□□□ 0.19
Lmx1bO88609 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC16.26■□□□□ 0.19
Lmx1bO88609 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.26■□□□□ 0.19
Lmx1bO88609 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Lmx1bO88609 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Lmx1bO88609 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Lmx1bO88609 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC16.25■□□□□ 0.19
Lmx1bO88609 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Lmx1bO88609 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Gm15378-201ENSMUST00000121894 207 ntBASIC16.25■□□□□ 0.19
Lmx1bO88609 AC153881.1-201ENSMUST00000214448 284 ntBASIC16.25■□□□□ 0.19
Lmx1bO88609 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Lmx1bO88609 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC16.25■□□□□ 0.19
Lmx1bO88609 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Lmx1bO88609 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Lmx1bO88609 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Lmx1bO88609 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Lmx1bO88609 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Lmx1bO88609 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Lmx1bO88609 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Lmx1bO88609 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.24■□□□□ 0.19
Lmx1bO88609 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Lmx1bO88609 Gm6576-201ENSMUST00000169678 883 ntBASIC16.24■□□□□ 0.19
Lmx1bO88609 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Lmx1bO88609 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.24■□□□□ 0.19
Lmx1bO88609 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.24■□□□□ 0.19
Lmx1bO88609 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Lmx1bO88609 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Lmx1bO88609 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.24■□□□□ 0.19
Lmx1bO88609 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Lmx1bO88609 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC16.23■□□□□ 0.19
Lmx1bO88609 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Lmx1bO88609 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms