Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Clk3O35492 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.11■□□□□ 0.33
Clk3O35492 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.11■□□□□ 0.33
Clk3O35492 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.11■□□□□ 0.33
Clk3O35492 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk3O35492 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Clk3O35492 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.1■□□□□ 0.33
Clk3O35492 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.1■□□□□ 0.33
Clk3O35492 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk3O35492 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Clk3O35492 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Clk3O35492 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.09■□□□□ 0.33
Clk3O35492 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.09■□□□□ 0.33
Clk3O35492 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.09■□□□□ 0.33
Clk3O35492 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.09■□□□□ 0.33
Clk3O35492 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Clk3O35492 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.09■□□□□ 0.33
Clk3O35492 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clk3O35492 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Clk3O35492 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clk3O35492 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.08■□□□□ 0.32
Clk3O35492 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Clk3O35492 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.08■□□□□ 0.32
Clk3O35492 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clk3O35492 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clk3O35492 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clk3O35492 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clk3O35492 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Clk3O35492 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.07■□□□□ 0.32
Clk3O35492 Gm26571-201ENSMUST00000181399 666 ntBASIC17.07■□□□□ 0.32
Clk3O35492 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Fst-202ENSMUST00000223640 2612 ntBASIC17.07■□□□□ 0.32
Clk3O35492 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clk3O35492 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.06■□□□□ 0.32
Clk3O35492 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.06■□□□□ 0.32
Clk3O35492 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.06■□□□□ 0.32
Clk3O35492 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.06■□□□□ 0.32
Clk3O35492 Gm10849-201ENSMUST00000100397 618 ntBASIC17.06■□□□□ 0.32
Clk3O35492 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Clk3O35492 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.06■□□□□ 0.32
Clk3O35492 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Clk3O35492 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms