Protein–RNA interactions for Protein: M0QWN7

Usp35, Ubiquitin-specific peptidase 35, mousemouse

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp35M0QWN7 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp35M0QWN7 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.28■□□□□ 0.68
Usp35M0QWN7 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp35M0QWN7 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.27■□□□□ 0.68
Usp35M0QWN7 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Mir6982-201ENSMUST00000184354 68 ntBASIC19.27■□□□□ 0.68
Usp35M0QWN7 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Usp35M0QWN7 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp35M0QWN7 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Usp35M0QWN7 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Usp35M0QWN7 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp35M0QWN7 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.26■□□□□ 0.67
Usp35M0QWN7 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Gm11249-201ENSMUST00000117071 859 ntBASIC19.26■□□□□ 0.67
Usp35M0QWN7 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Gm18666-201ENSMUST00000190039 958 ntBASIC19.26■□□□□ 0.67
Usp35M0QWN7 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.26■□□□□ 0.67
Usp35M0QWN7 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Usp35M0QWN7 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp35M0QWN7 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
Usp35M0QWN7 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Gm2399-201ENSMUST00000104944 225 ntBASIC19.24■□□□□ 0.67
Usp35M0QWN7 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.24■□□□□ 0.67
Usp35M0QWN7 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp35M0QWN7 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.23■□□□□ 0.67
Usp35M0QWN7 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.23■□□□□ 0.67
Usp35M0QWN7 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp35M0QWN7 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Arhgef33-211ENSMUST00000225658 473 ntBASIC19.22■□□□□ 0.67
Usp35M0QWN7 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp35M0QWN7 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms