Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
Trav11A0A0B4J1J9 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Gm27801-201ENSMUST00000184174 223 ntBASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 CT030146.1-201ENSMUST00000220919 217 ntBASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Gm9847-201ENSMUST00000052528 599 ntBASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trav11A0A0B4J1J9 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Smad6-203ENSMUST00000179458 273 ntBASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trav11A0A0B4J1J9 Fcho2-208ENSMUST00000224992 2964 ntBASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Zcchc6-207ENSMUST00000225576 2499 ntBASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Gm9194-201ENSMUST00000220749 1447 ntBASIC12.36□□□□□ -0.43
Trav11A0A0B4J1J9 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Trav11A0A0B4J1J9 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav11A0A0B4J1J9 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC12.35□□□□□ -0.43
Trav11A0A0B4J1J9 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav11A0A0B4J1J9 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav11A0A0B4J1J9 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Trav11A0A0B4J1J9 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav11A0A0B4J1J9 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trav11A0A0B4J1J9 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms