Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trbv1A0A0B4J1G7 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trbv1A0A0B4J1G7 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trbv1A0A0B4J1G7 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC14.14□□□□□ -0.15
Trbv1A0A0B4J1G7 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trbv1A0A0B4J1G7 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trbv1A0A0B4J1G7 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm27801-201ENSMUST00000184174 223 ntBASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Cdc34b-202ENSMUST00000188741 1252 ntBASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm43338-201ENSMUST00000198617 2223 ntBASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trbv1A0A0B4J1G7 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm37194-201ENSMUST00000193092 3031 ntBASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm21168-201ENSMUST00000199646 1096 ntBASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm43060-201ENSMUST00000200621 289 ntBASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm40848-201ENSMUST00000221998 324 ntBASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trbv1A0A0B4J1G7 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC14.09□□□□□ -0.15
Trbv1A0A0B4J1G7 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms