Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Snrpd1-201ENSMUST00000002551 837 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Upf3bQ3ULL6 Gm6871-202ENSMUST00000110214 1638 ntAPPRIS P5 TSL 5 BASIC6.53□□□□□ -1.36
Upf3bQ3ULL6 Gm43211-201ENSMUST00000196901 1899 ntBASIC6.53□□□□□ -1.36
Upf3bQ3ULL6 Skil-204ENSMUST00000118470 6578 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
Upf3bQ3ULL6 Gm43981-201ENSMUST00000203285 1467 ntBASIC6.53□□□□□ -1.36
Upf3bQ3ULL6 Adipor2-201ENSMUST00000032272 4184 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Upf3bQ3ULL6 Adam34-202ENSMUST00000212185 2335 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Upf3bQ3ULL6 Cntnap2-202ENSMUST00000114641 9827 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
Upf3bQ3ULL6 C730027H18Rik-202ENSMUST00000219822 3268 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
Upf3bQ3ULL6 Cyp2c65-201ENSMUST00000087236 1928 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Pbrm1-202ENSMUST00000022474 4843 ntTSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm6558-201ENSMUST00000191934 1973 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Cylc1-202ENSMUST00000210720 1969 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 B830042I05Rik-201ENSMUST00000208333 1620 ntTSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Hrnr-201ENSMUST00000090856 10656 ntAPPRIS P2 TSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Igkv6-23-201ENSMUST00000103386 369 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Ighv8-12-201ENSMUST00000103540 315 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm12643-201ENSMUST00000116078 374 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm13811-201ENSMUST00000117800 256 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm14580-201ENSMUST00000119122 718 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm9005-201ENSMUST00000119908 607 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm15618-201ENSMUST00000121610 452 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm15696-201ENSMUST00000121730 445 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 4930586N03Rik-201ENSMUST00000122940 881 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm11184-201ENSMUST00000126437 268 ntTSL 3 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Klra5-201ENSMUST00000014683 1147 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm13417-201ENSMUST00000155475 533 ntTSL 2 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Hspe1-ps3-201ENSMUST00000172726 277 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm24081-201ENSMUST00000175177 125 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm26923-201ENSMUST00000182615 996 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm8367-201ENSMUST00000186145 887 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Olfr1252-201ENSMUST00000186710 1099 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 7530428D23Rik-201ENSMUST00000191725 765 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm43470-201ENSMUST00000196175 454 ntTSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 6720469O03Rik-201ENSMUST00000206785 1201 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 4930542C16Rik-203ENSMUST00000212108 1207 ntTSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm34263-202ENSMUST00000214353 303 ntTSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 AC154634.2-201ENSMUST00000225983 1184 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Olfr19-201ENSMUST00000057886 1142 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Olfr794-201ENSMUST00000059957 963 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Mir194-1-201ENSMUST00000083647 67 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 F830112A20Rik-201ENSMUST00000194249 3552 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 1700071M16Rik-203ENSMUST00000169733 2504 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Clec12a-201ENSMUST00000065289 2502 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 1700011H14Rik-205ENSMUST00000228936 3444 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Cep57l1-204ENSMUST00000186239 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Vmn1r39-201ENSMUST00000226217 2258 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Vmn1r39-204ENSMUST00000227555 2297 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Vmn1r39-205ENSMUST00000228008 2283 ntAPPRIS ALT2 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 CT025660.2-201ENSMUST00000217654 3539 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm14367-201ENSMUST00000119214 1497 ntBASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Btbd35f9-201ENSMUST00000178219 1497 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Btbd35f22-201ENSMUST00000178747 1497 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Btbd35f30-201ENSMUST00000179069 1497 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Btbd35f25-201ENSMUST00000179086 1497 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Btbd35f6-201ENSMUST00000179466 1497 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Btbd35f29-201ENSMUST00000179532 1497 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Btbd35f8-201ENSMUST00000180004 1497 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Btbd35f26-201ENSMUST00000180197 1497 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Zfp994-201ENSMUST00000179996 4880 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Vmn1r36-204ENSMUST00000226829 1923 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm3106-201ENSMUST00000179743 2383 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm16170-201ENSMUST00000156882 3754 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Gm8126-201ENSMUST00000169587 1764 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 Dnhd1-203ENSMUST00000145988 14536 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
Upf3bQ3ULL6 4932435O22Rik-202ENSMUST00000148405 3406 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Ehf-202ENSMUST00000111174 1307 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Aadac-201ENSMUST00000029325 1324 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Naip6-201ENSMUST00000042220 6705 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Nlrp5-201ENSMUST00000015866 3508 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Hlcs-209ENSMUST00000228910 4150 ntAPPRIS ALT2 BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm42994-201ENSMUST00000195964 2549 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm15425-201ENSMUST00000119013 2711 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Akap4-203ENSMUST00000115751 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Vrk2-202ENSMUST00000109504 1642 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Stk32a-201ENSMUST00000045477 3765 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 2310002F09Rik-202ENSMUST00000181551 2468 ntTSL 5 BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Npy2r-202ENSMUST00000098997 3325 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 4930555F03Rik-202ENSMUST00000126285 3604 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm26146-201ENSMUST00000104478 185 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Zfp971-201ENSMUST00000108925 923 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Cd47-202ENSMUST00000114496 867 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm14382-201ENSMUST00000117374 437 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm16074-201ENSMUST00000119524 444 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm12631-201ENSMUST00000130576 637 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm17118-201ENSMUST00000164032 335 ntTSL 5 BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 1110008L16Rik-203ENSMUST00000183654 943 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 0610031O16Rik-204ENSMUST00000185122 825 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm29385-201ENSMUST00000186831 363 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm37475-201ENSMUST00000193107 1015 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm31211-201ENSMUST00000199170 253 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm43269-201ENSMUST00000202075 518 ntTSL 3 BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm5027-201ENSMUST00000206700 375 ntBASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 AC108846.2-201ENSMUST00000214925 731 ntTSL 5 BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Mcts1-201ENSMUST00000000365 783 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Vwc2l-201ENSMUST00000053922 4655 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Zfp970-201ENSMUST00000099002 794 ntTSL 2 BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Gm14391-201ENSMUST00000099028 473 ntTSL 5 BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Xpo7-202ENSMUST00000167242 15121 ntAPPRIS ALT1 TSL 5 BASIC6.51□□□□□ -1.37
Upf3bQ3ULL6 Obox4-ps28-201ENSMUST00000175654 1362 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 76,532 protein–RNA pairs in 92.2 ms