Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Snora47-201ENSMUST00000157483 138 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm23539-201ENSMUST00000157537 224 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm22210-201ENSMUST00000158101 144 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm22569-201ENSMUST00000175545 124 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 1700006E09Rik-203ENSMUST00000176722 608 ntTSL 3 BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm19560-201ENSMUST00000177510 514 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm3650-201ENSMUST00000180600 747 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm2539-203ENSMUST00000181352 746 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm37784-201ENSMUST00000193233 189 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm31887-201ENSMUST00000197661 501 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm43105-201ENSMUST00000202987 459 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm44251-201ENSMUST00000204963 442 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm5065-202ENSMUST00000207531 807 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm6290-201ENSMUST00000207666 1158 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm45326-201ENSMUST00000209234 721 ntTSL 3 BASIC5.41□□□□□ -1.54
Nkx3-1P97436 E130101E03Rik-201ENSMUST00000214469 1163 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm10688-201ENSMUST00000214985 520 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm9088-201ENSMUST00000220237 508 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 AL669819.1-201ENSMUST00000225143 330 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 CT009600.1-201ENSMUST00000228771 337 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Gm15500-201ENSMUST00000071523 894 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Prl3d1-201ENSMUST00000082079 872 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Fam183b-202ENSMUST00000094156 567 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Slc16a4-201ENSMUST00000029502 2248 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Cyp2j8-201ENSMUST00000124729 1512 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Olfr1047-202ENSMUST00000216056 2450 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Cenpw-202ENSMUST00000216853 4143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Cyp2j13-201ENSMUST00000030305 4374 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Lgi1-209ENSMUST00000199812 2262 ntTSL 5 BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Ppp2r3a-201ENSMUST00000066773 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 B3gnt5-201ENSMUST00000079780 4258 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Arhgef9-203ENSMUST00000113878 5012 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 AC165080.3-201ENSMUST00000217162 3116 ntBASIC5.41□□□□□ -1.54
Nkx3-1P97436 Tbpl2-201ENSMUST00000080453 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Nkx3-1P97436 Xpo7-202ENSMUST00000167242 15121 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
Nkx3-1P97436 4921539E11Rik-201ENSMUST00000030245 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Cdh7-203ENSMUST00000129923 1409 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Olfr726-207ENSMUST00000217319 1419 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Vmn2r5-202ENSMUST00000177184 2736 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Plekhg1-201ENSMUST00000042438 7190 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm43496-201ENSMUST00000201682 3001 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Ms4a4c-201ENSMUST00000072729 1723 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm42975-201ENSMUST00000200612 1491 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm31822-201ENSMUST00000216096 2572 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Scoc-201ENSMUST00000081506 1791 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm21284-201ENSMUST00000205532 3736 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm37967-201ENSMUST00000195634 2665 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Igkv16-104-201ENSMUST00000103323 378 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm22372-201ENSMUST00000104589 136 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm8692-201ENSMUST00000118102 438 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm16074-201ENSMUST00000119524 444 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm11498-201ENSMUST00000120660 949 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm11852-201ENSMUST00000120806 222 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm15959-201ENSMUST00000121724 368 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 4933411O13Rik-203ENSMUST00000146849 607 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm25013-201ENSMUST00000158402 128 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm22094-201ENSMUST00000158976 117 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Sptssb-202ENSMUST00000171529 772 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Srsx-201ENSMUST00000171714 1083 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm9597-201ENSMUST00000171913 602 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm5624-202ENSMUST00000178184 492 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm26969-201ENSMUST00000183203 648 ntTSL 3 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Mir6971-201ENSMUST00000183497 63 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm27255-201ENSMUST00000184303 529 ntTSL 3 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Mir7037-201ENSMUST00000184414 65 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm28998-201ENSMUST00000186194 919 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm28576-201ENSMUST00000189007 919 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm37103-201ENSMUST00000191830 115 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm37517-201ENSMUST00000194004 1289 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 AC157822.1-201ENSMUST00000196643 80 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm45724-201ENSMUST00000213031 420 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 CT485607.3-201ENSMUST00000213361 672 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 AC133650.1-201ENSMUST00000217243 578 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Gm34557-201ENSMUST00000223115 375 ntTSL 3 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 AC130217.2-201ENSMUST00000224009 2990 ntBASIC5.4□□□□□ -1.54
Nkx3-1P97436 Vmn1r38-203ENSMUST00000227694 909 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Scp2d1-201ENSMUST00000028918 760 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Vmn1r4-201ENSMUST00000096612 1034 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Nkx3-1P97436 Lum-201ENSMUST00000038160 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Tmprss15-201ENSMUST00000023566 4177 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Xcr1-201ENSMUST00000182350 4453 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Fmn1-201ENSMUST00000081349 4235 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Tfb1m-201ENSMUST00000041003 1327 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Gm4070-201ENSMUST00000106766 8795 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Gvin1-201ENSMUST00000006667 8795 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Fbxo3-202ENSMUST00000102565 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Cdh9-202ENSMUST00000228307 3539 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Gm20655-202ENSMUST00000181428 2946 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Gm5886-203ENSMUST00000203983 2613 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Olfr1340-204ENSMUST00000217334 2001 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Asb4-201ENSMUST00000043294 3286 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Olfr118-202ENSMUST00000215811 1742 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
Nkx3-1P97436 Gm10693-202ENSMUST00000205904 4007 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
Nkx3-1P97436 Gbp9-201ENSMUST00000031238 4381 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
Nkx3-1P97436 Ccp110-201ENSMUST00000038650 4716 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
Nkx3-1P97436 A230028O05Rik-201ENSMUST00000181655 2793 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
Nkx3-1P97436 Dnah1-201ENSMUST00000048603 12872 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
Nkx3-1P97436 Olfr947-ps1-202ENSMUST00000214936 2168 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
Nkx3-1P97436 Gm44045-201ENSMUST00000204906 2520 ntBASIC5.39□□□□□ -1.55
Nkx3-1P97436 Vmn1r176-203ENSMUST00000226767 2536 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms