Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Scn11aQ9R053 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Scn11aQ9R053 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Scn11aQ9R053 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Scn11aQ9R053 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Scn11aQ9R053 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Scn11aQ9R053 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC21.56■■□□□ 1.04
Scn11aQ9R053 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Scn11aQ9R053 Gm13559-201ENSMUST00000120476 863 ntBASIC21.56■■□□□ 1.04
Scn11aQ9R053 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Scn11aQ9R053 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC21.56■■□□□ 1.04
Scn11aQ9R053 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
Scn11aQ9R053 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Scn11aQ9R053 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Scn11aQ9R053 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Scn11aQ9R053 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Scn11aQ9R053 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Scn11aQ9R053 Gm10418-201ENSMUST00000100943 576 ntBASIC21.55■■□□□ 1.04
Scn11aQ9R053 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC21.55■■□□□ 1.04
Scn11aQ9R053 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Scn11aQ9R053 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.55■■□□□ 1.04
Scn11aQ9R053 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Scn11aQ9R053 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Scn11aQ9R053 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Scn11aQ9R053 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Scn11aQ9R053 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Gm12085-201ENSMUST00000119263 940 ntBASIC21.52■■□□□ 1.04
Scn11aQ9R053 Gm33142-201ENSMUST00000193913 867 ntBASIC21.52■■□□□ 1.04
Scn11aQ9R053 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scn11aQ9R053 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Scn11aQ9R053 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Scn11aQ9R053 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.51■■□□□ 1.03
Scn11aQ9R053 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Gm18101-201ENSMUST00000215769 548 ntBASIC21.51■■□□□ 1.03
Scn11aQ9R053 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Scn11aQ9R053 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.5■■□□□ 1.03
Scn11aQ9R053 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Scn11aQ9R053 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Scn11aQ9R053 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Scn11aQ9R053 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Scn11aQ9R053 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Scn11aQ9R053 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Scn11aQ9R053 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Scn11aQ9R053 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC21.5■■□□□ 1.03
Scn11aQ9R053 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Scn11aQ9R053 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms