Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col4a4Q9QZR9 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col4a4Q9QZR9 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col4a4Q9QZR9 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.27■□□□□ 0.52
Col4a4Q9QZR9 Gm13401-201ENSMUST00000117074 291 ntBASIC18.27■□□□□ 0.52
Col4a4Q9QZR9 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col4a4Q9QZR9 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col4a4Q9QZR9 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col4a4Q9QZR9 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col4a4Q9QZR9 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col4a4Q9QZR9 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Mir770-201ENSMUST00000103252 94 ntBASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Gm24841-201ENSMUST00000158676 357 ntBASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col4a4Q9QZR9 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Gm11355-201ENSMUST00000121120 306 ntBASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Gm10566-201ENSMUST00000086739 996 ntBASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col4a4Q9QZR9 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col4a4Q9QZR9 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Gm13884-201ENSMUST00000118103 829 ntBASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Gm37722-201ENSMUST00000193757 208 ntBASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col4a4Q9QZR9 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms