Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC19.77■□□□□ 0.76
Copb1Q9JIF7 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Copb1Q9JIF7 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Copb1Q9JIF7 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Copb1Q9JIF7 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Copb1Q9JIF7 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
Copb1Q9JIF7 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Copb1Q9JIF7 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Copb1Q9JIF7 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Copb1Q9JIF7 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Gm42778-201ENSMUST00000199644 553 ntBASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Copb1Q9JIF7 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Copb1Q9JIF7 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Gm10493-201ENSMUST00000097270 612 ntBASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Copb1Q9JIF7 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Copb1Q9JIF7 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.72■□□□□ 0.75
Copb1Q9JIF7 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.72■□□□□ 0.75
Copb1Q9JIF7 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Copb1Q9JIF7 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Copb1Q9JIF7 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Copb1Q9JIF7 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Copb1Q9JIF7 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Copb1Q9JIF7 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Copb1Q9JIF7 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Copb1Q9JIF7 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms