Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC20.67■□□□□ 0.9
Upf1Q9EPU0 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf1Q9EPU0 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Upf1Q9EPU0 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.67■□□□□ 0.9
Upf1Q9EPU0 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf1Q9EPU0 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf1Q9EPU0 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.67■□□□□ 0.9
Upf1Q9EPU0 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC20.66■□□□□ 0.9
Upf1Q9EPU0 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.66■□□□□ 0.9
Upf1Q9EPU0 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20.66■□□□□ 0.9
Upf1Q9EPU0 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC20.66■□□□□ 0.9
Upf1Q9EPU0 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC20.66■□□□□ 0.9
Upf1Q9EPU0 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf1Q9EPU0 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 AC161829.1-201ENSMUST00000220298 281 ntBASIC20.65■□□□□ 0.9
Upf1Q9EPU0 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf1Q9EPU0 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Upf1Q9EPU0 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Upf1Q9EPU0 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
Upf1Q9EPU0 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Upf1Q9EPU0 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf1Q9EPU0 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf1Q9EPU0 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf1Q9EPU0 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf1Q9EPU0 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf1Q9EPU0 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf1Q9EPU0 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Gm5264-201ENSMUST00000190584 848 ntBASIC20.63■□□□□ 0.89
Upf1Q9EPU0 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC20.63■□□□□ 0.89
Upf1Q9EPU0 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Upf1Q9EPU0 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Gm23935-201ENSMUST00000102303 57 ntBASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Gm24270-201ENSMUST00000102326 57 ntBASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Gm24245-201ENSMUST00000157318 57 ntBASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Gm37722-201ENSMUST00000193757 208 ntBASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf1Q9EPU0 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Gm15794-201ENSMUST00000120182 631 ntBASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Upf1Q9EPU0 AC153889.1-201ENSMUST00000219257 330 ntBASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf1Q9EPU0 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Gm2756-201ENSMUST00000195851 400 ntBASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf1Q9EPU0 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms