Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Rab3c-203ENSMUST00000224180 967 ntBASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
Ddx56Q9D0R4 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Gm44549-201ENSMUST00000208351 577 ntBASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx56Q9D0R4 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Gm2399-201ENSMUST00000104944 225 ntBASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx56Q9D0R4 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
Ddx56Q9D0R4 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx56Q9D0R4 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms