Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trim11Q99PQ2 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim11Q99PQ2 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim11Q99PQ2 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim11Q99PQ2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Trim11Q99PQ2 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.58■□□□□ 0.88
Trim11Q99PQ2 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim11Q99PQ2 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim11Q99PQ2 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim11Q99PQ2 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Trim11Q99PQ2 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.88
Trim11Q99PQ2 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.57■□□□□ 0.88
Trim11Q99PQ2 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Gm42569-201ENSMUST00000200539 472 ntBASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Gm6365-201ENSMUST00000054711 744 ntBASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim11Q99PQ2 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Gm8495-201ENSMUST00000188740 694 ntBASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim11Q99PQ2 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim11Q99PQ2 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Gm7290-201ENSMUST00000104990 617 ntBASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Gm12918-201ENSMUST00000120234 636 ntBASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Gm15710-201ENSMUST00000121821 636 ntBASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Gm5075-201ENSMUST00000196916 622 ntBASIC20.53■□□□□ 0.88
Trim11Q99PQ2 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim11Q99PQ2 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim11Q99PQ2 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms