Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Cdk9Q99J95 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdk9Q99J95 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdk9Q99J95 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cdk9Q99J95 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdk9Q99J95 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cdk9Q99J95 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Gm43672-201ENSMUST00000199072 1731 ntBASIC18.18■□□□□ 0.5
Cdk9Q99J95 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.18■□□□□ 0.5
Cdk9Q99J95 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.18■□□□□ 0.5
Cdk9Q99J95 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdk9Q99J95 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Cdk9Q99J95 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk9Q99J95 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Cdk9Q99J95 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.16■□□□□ 0.5
Cdk9Q99J95 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC18.16■□□□□ 0.5
Cdk9Q99J95 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdk9Q99J95 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cdk9Q99J95 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cdk9Q99J95 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cdk9Q99J95 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cdk9Q99J95 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Cdk9Q99J95 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Mir7075-201ENSMUST00000184187 82 ntBASIC18.14■□□□□ 0.49
Cdk9Q99J95 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdk9Q99J95 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.13■□□□□ 0.49
Cdk9Q99J95 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk9Q99J95 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.13■□□□□ 0.49
Cdk9Q99J95 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk9Q99J95 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk9Q99J95 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cdk9Q99J95 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Cdk9Q99J95 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.13■□□□□ 0.49
Cdk9Q99J95 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms