Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc38Q8CDN8 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc38Q8CDN8 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc38Q8CDN8 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc38Q8CDN8 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc38Q8CDN8 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Gm26571-201ENSMUST00000181399 666 ntBASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc38Q8CDN8 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Ccdc38Q8CDN8 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Ccdc38Q8CDN8 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc38Q8CDN8 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc38Q8CDN8 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc38Q8CDN8 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc38Q8CDN8 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc38Q8CDN8 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc38Q8CDN8 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc38Q8CDN8 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc38Q8CDN8 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Ccdc38Q8CDN8 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc38Q8CDN8 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
Ccdc38Q8CDN8 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc38Q8CDN8 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.98■□□□□ 0.79
Ccdc38Q8CDN8 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc38Q8CDN8 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
Ccdc38Q8CDN8 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc38Q8CDN8 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.98■□□□□ 0.79
Ccdc38Q8CDN8 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms