Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm8668-201ENSMUST00000120559 1447 ntBASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Gm10231-201ENSMUST00000181584 441 ntBASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Gm10175-202ENSMUST00000208752 441 ntBASIC24.89■■□□□ 1.58
Usp40Q8BWR4 AC121577.1-201ENSMUST00000227302 707 ntBASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Usp40Q8BWR4 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Usp40Q8BWR4 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Usp40Q8BWR4 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.57
Usp40Q8BWR4 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.57
Usp40Q8BWR4 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Usp40Q8BWR4 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Gm11539-201ENSMUST00000119837 557 ntBASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Gm13436-201ENSMUST00000120418 567 ntBASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Gm13559-201ENSMUST00000120476 863 ntBASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Usp40Q8BWR4 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Usp40Q8BWR4 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Usp40Q8BWR4 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Usp40Q8BWR4 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Usp40Q8BWR4 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Usp40Q8BWR4 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Usp40Q8BWR4 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Usp40Q8BWR4 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Usp40Q8BWR4 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Usp40Q8BWR4 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
Usp40Q8BWR4 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Usp40Q8BWR4 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Usp40Q8BWR4 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Usp40Q8BWR4 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Usp40Q8BWR4 AC108858.1-201ENSMUST00000228461 1498 ntBASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
Usp40Q8BWR4 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Usp40Q8BWR4 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Usp40Q8BWR4 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC24.83■■□□□ 1.57
Usp40Q8BWR4 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
Usp40Q8BWR4 AC130671.1-201ENSMUST00000227384 1237 ntBASIC24.83■■□□□ 1.57
Usp40Q8BWR4 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Usp40Q8BWR4 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Usp40Q8BWR4 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC24.83■■□□□ 1.56
Usp40Q8BWR4 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC24.82■■□□□ 1.56
Usp40Q8BWR4 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
Usp40Q8BWR4 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Usp40Q8BWR4 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Gm10517-202ENSMUST00000192970 758 ntBASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms