Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC15.12■□□□□ 0.01
Col7a1Q63870 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Col7a1Q63870 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Col7a1Q63870 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col7a1Q63870 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC15.12■□□□□ 0.01
Col7a1Q63870 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Col7a1Q63870 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col7a1Q63870 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC15.11■□□□□ 0.01
Col7a1Q63870 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Gm11452-201ENSMUST00000122376 690 ntBASIC15.11■□□□□ 0.01
Col7a1Q63870 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Col7a1Q63870 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col7a1Q63870 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Col7a1Q63870 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC15.11■□□□□ 0.01
Col7a1Q63870 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.11■□□□□ 0.01
Col7a1Q63870 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC15.11■□□□□ 0.01
Col7a1Q63870 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC15.11■□□□□ 0.01
Col7a1Q63870 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col7a1Q63870 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col7a1Q63870 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Gm11355-201ENSMUST00000121120 306 ntBASIC15.1■□□□□ 0.01
Col7a1Q63870 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC15.1■□□□□ 0.01
Col7a1Q63870 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Col7a1Q63870 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Col7a1Q63870 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Col7a1Q63870 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC15.1■□□□□ 0.01
Col7a1Q63870 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col7a1Q63870 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Col7a1Q63870 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 AC153889.1-201ENSMUST00000219257 330 ntBASIC15.09■□□□□ 0.01
Col7a1Q63870 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC15.09■□□□□ 0.01
Col7a1Q63870 Mir2861-201ENSMUST00000175539 82 ntBASIC15.09■□□□□ 0.01
Col7a1Q63870 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Gm18195-201ENSMUST00000207604 706 ntBASIC15.09■□□□□ 0.01
Col7a1Q63870 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col7a1Q63870 Gm45640-201ENSMUST00000210665 1896 ntBASIC15.08■□□□□ 0.01
Col7a1Q63870 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC15.08■□□□□ 0.01
Col7a1Q63870 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
Col7a1Q63870 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
Col7a1Q63870 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Col7a1Q63870 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC15.08■□□□□ 0
Col7a1Q63870 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col7a1Q63870 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC15.07■□□□□ 0
Col7a1Q63870 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms