Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Usf1Q61069 Gm18101-201ENSMUST00000215769 548 ntBASIC16.46■□□□□ 0.23
Usf1Q61069 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Usf1Q61069 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usf1Q61069 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usf1Q61069 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Usf1Q61069 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
Usf1Q61069 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Usf1Q61069 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Usf1Q61069 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC16.45■□□□□ 0.22
Usf1Q61069 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Usf1Q61069 Ank2-226ENSMUST00000189368 339 ntBASIC16.45■□□□□ 0.22
Usf1Q61069 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usf1Q61069 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Usf1Q61069 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 Gm22697-201ENSMUST00000175194 63 ntBASIC16.44■□□□□ 0.22
Usf1Q61069 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.44■□□□□ 0.22
Usf1Q61069 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 AC134329.2-201ENSMUST00000217897 428 ntBASIC16.44■□□□□ 0.22
Usf1Q61069 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.44■□□□□ 0.22
Usf1Q61069 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usf1Q61069 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC16.43■□□□□ 0.22
Usf1Q61069 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.43■□□□□ 0.22
Usf1Q61069 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Usf1Q61069 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Usf1Q61069 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Usf1Q61069 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Usf1Q61069 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Usf1Q61069 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Usf1Q61069 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.42■□□□□ 0.22
Usf1Q61069 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Gm38027-201ENSMUST00000192315 235 ntBASIC16.42■□□□□ 0.22
Usf1Q61069 Gm37805-201ENSMUST00000192612 1094 ntBASIC16.42■□□□□ 0.22
Usf1Q61069 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC16.42■□□□□ 0.22
Usf1Q61069 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Usf1Q61069 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
Usf1Q61069 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Usf1Q61069 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Usf1Q61069 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC16.42■□□□□ 0.22
Usf1Q61069 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC16.41■□□□□ 0.22
Usf1Q61069 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Usf1Q61069 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16.41■□□□□ 0.22
Usf1Q61069 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC16.41■□□□□ 0.22
Usf1Q61069 Gm25016-201ENSMUST00000158399 131 ntBASIC16.41■□□□□ 0.22
Usf1Q61069 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC16.41■□□□□ 0.22
Usf1Q61069 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Usf1Q61069 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Usf1Q61069 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usf1Q61069 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Usf1Q61069 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usf1Q61069 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Usf1Q61069 Gm14464-201ENSMUST00000119658 1254 ntBASIC16.4■□□□□ 0.22
Usf1Q61069 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.4■□□□□ 0.22
Usf1Q61069 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Usf1Q61069 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usf1Q61069 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Usf1Q61069 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 78.5 ms