Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc88aQ5SNZ0 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc88aQ5SNZ0 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm14464-201ENSMUST00000119658 1254 ntBASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm6345-202ENSMUST00000180900 204 ntBASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm18025-201ENSMUST00000221733 862 ntBASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Timm23-208ENSMUST00000226683 750 ntBASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.83■□□□□ 0.93
Ccdc88aQ5SNZ0 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc88aQ5SNZ0 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc88aQ5SNZ0 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
Ccdc88aQ5SNZ0 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc88aQ5SNZ0 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc88aQ5SNZ0 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.83■□□□□ 0.92
Ccdc88aQ5SNZ0 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc88aQ5SNZ0 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc88aQ5SNZ0 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm33142-201ENSMUST00000193913 867 ntBASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc88aQ5SNZ0 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm12382-201ENSMUST00000122005 922 ntBASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.8■□□□□ 0.92
Ccdc88aQ5SNZ0 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.79■□□□□ 0.92
Ccdc88aQ5SNZ0 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Ccdc88aQ5SNZ0 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc88aQ5SNZ0 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm15375-201ENSMUST00000119510 849 ntBASIC20.79■□□□□ 0.92
Ccdc88aQ5SNZ0 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm38285-201ENSMUST00000192928 922 ntBASIC20.79■□□□□ 0.92
Ccdc88aQ5SNZ0 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc88aQ5SNZ0 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc88aQ5SNZ0 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Ccdc88aQ5SNZ0 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc88aQ5SNZ0 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc88aQ5SNZ0 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc88aQ5SNZ0 Gm10013-201ENSMUST00000106074 672 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms