Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Limch1Q3UH68 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Gm42939-201ENSMUST00000197514 2205 ntBASIC21.25■□□□□ 0.99
Limch1Q3UH68 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Limch1Q3UH68 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Trmt13-210ENSMUST00000198454 880 ntBASIC21.24■□□□□ 0.99
Limch1Q3UH68 Gm44672-201ENSMUST00000206944 1098 ntBASIC21.24■□□□□ 0.99
Limch1Q3UH68 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Limch1Q3UH68 Gm43672-201ENSMUST00000199072 1731 ntBASIC21.24■□□□□ 0.99
Limch1Q3UH68 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Gm44878-201ENSMUST00000205812 1295 ntBASIC21.23■□□□□ 0.99
Limch1Q3UH68 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Rab3c-203ENSMUST00000224180 967 ntBASIC21.23■□□□□ 0.99
Limch1Q3UH68 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Limch1Q3UH68 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Limch1Q3UH68 Dmtn-207ENSMUST00000228001 2437 ntBASIC21.22■□□□□ 0.99
Limch1Q3UH68 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.22■□□□□ 0.99
Limch1Q3UH68 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC21.22■□□□□ 0.99
Limch1Q3UH68 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Limch1Q3UH68 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.22■□□□□ 0.99
Limch1Q3UH68 Gm10812-201ENSMUST00000099864 546 ntBASIC21.22■□□□□ 0.99
Limch1Q3UH68 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Limch1Q3UH68 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Limch1Q3UH68 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Fst-202ENSMUST00000223640 2612 ntBASIC21.21■□□□□ 0.99
Limch1Q3UH68 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Rarb-207ENSMUST00000225921 2756 ntBASIC21.21■□□□□ 0.99
Limch1Q3UH68 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Limch1Q3UH68 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Gm37563-201ENSMUST00000192580 1513 ntBASIC21.2■□□□□ 0.98
Limch1Q3UH68 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Limch1Q3UH68 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Limch1Q3UH68 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms