Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Vti1aO89116 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Vti1aO89116 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vti1aO89116 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vti1aO89116 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vti1aO89116 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vti1aO89116 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Vti1aO89116 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vti1aO89116 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vti1aO89116 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.48■□□□□ 0.71
Vti1aO89116 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC19.48■□□□□ 0.71
Vti1aO89116 Krtap5-1-202ENSMUST00000188274 742 ntBASIC19.48■□□□□ 0.71
Vti1aO89116 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.48■□□□□ 0.71
Vti1aO89116 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Vti1aO89116 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.48■□□□□ 0.71
Vti1aO89116 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vti1aO89116 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vti1aO89116 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vti1aO89116 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vti1aO89116 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.47■□□□□ 0.71
Vti1aO89116 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.47■□□□□ 0.71
Vti1aO89116 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vti1aO89116 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.46■□□□□ 0.71
Vti1aO89116 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Vti1aO89116 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Vti1aO89116 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Vti1aO89116 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Vti1aO89116 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 Flg-201ENSMUST00000050758 1488 ntBASIC19.45■□□□□ 0.7
Vti1aO89116 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vti1aO89116 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.44■□□□□ 0.7
Vti1aO89116 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Vti1aO89116 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Vti1aO89116 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Vti1aO89116 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vti1aO89116 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Vti1aO89116 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Vti1aO89116 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Vti1aO89116 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.43■□□□□ 0.7
Vti1aO89116 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.43■□□□□ 0.7
Vti1aO89116 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.43■□□□□ 0.7
Vti1aO89116 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Vti1aO89116 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms