Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC16.34■□□□□ 0.21
Lmx1bO88609 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC16.34■□□□□ 0.21
Lmx1bO88609 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC16.34■□□□□ 0.21
Lmx1bO88609 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Lmx1bO88609 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lmx1bO88609 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Lmx1bO88609 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.21
Lmx1bO88609 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lmx1bO88609 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Lmx1bO88609 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lmx1bO88609 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lmx1bO88609 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Lmx1bO88609 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Gm35558-201ENSMUST00000222675 2219 ntBASIC16.33■□□□□ 0.2
Lmx1bO88609 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Gm10698-201ENSMUST00000182663 604 ntBASIC16.33■□□□□ 0.2
Lmx1bO88609 Gm18666-201ENSMUST00000190039 958 ntBASIC16.33■□□□□ 0.2
Lmx1bO88609 AC163280.1-201ENSMUST00000228194 1100 ntBASIC16.33■□□□□ 0.2
Lmx1bO88609 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Lmx1bO88609 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
Lmx1bO88609 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Lmx1bO88609 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Lmx1bO88609 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lmx1bO88609 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lmx1bO88609 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC16.32■□□□□ 0.2
Lmx1bO88609 Gm11927-201ENSMUST00000118472 759 ntBASIC16.32■□□□□ 0.2
Lmx1bO88609 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.32■□□□□ 0.2
Lmx1bO88609 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lmx1bO88609 Mir6982-201ENSMUST00000184354 68 ntBASIC16.32■□□□□ 0.2
Lmx1bO88609 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lmx1bO88609 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.32■□□□□ 0.2
Lmx1bO88609 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lmx1bO88609 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lmx1bO88609 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Lmx1bO88609 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lmx1bO88609 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lmx1bO88609 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lmx1bO88609 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC16.31■□□□□ 0.2
Lmx1bO88609 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC16.31■□□□□ 0.2
Lmx1bO88609 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lmx1bO88609 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lmx1bO88609 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lmx1bO88609 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC16.31■□□□□ 0.2
Lmx1bO88609 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Lmx1bO88609 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.31■□□□□ 0.2
Lmx1bO88609 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Lmx1bO88609 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lmx1bO88609 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lmx1bO88609 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
Lmx1bO88609 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lmx1bO88609 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lmx1bO88609 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC16.3■□□□□ 0.2
Lmx1bO88609 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lmx1bO88609 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Lmx1bO88609 Flg-201ENSMUST00000050758 1488 ntBASIC16.3■□□□□ 0.2
Lmx1bO88609 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lmx1bO88609 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Lmx1bO88609 Gm13158-201ENSMUST00000122007 736 ntBASIC16.3■□□□□ 0.2
Lmx1bO88609 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lmx1bO88609 Arhgef33-211ENSMUST00000225658 473 ntBASIC16.3■□□□□ 0.2
Lmx1bO88609 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Lmx1bO88609 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Lmx1bO88609 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lmx1bO88609 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lmx1bO88609 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lmx1bO88609 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lmx1bO88609 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lmx1bO88609 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Grk6-206ENSMUST00000224995 2971 ntBASIC16.29■□□□□ 0.2
Lmx1bO88609 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lmx1bO88609 Mtag2-201ENSMUST00000058665 714 ntBASIC16.29■□□□□ 0.2
Lmx1bO88609 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lmx1bO88609 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lmx1bO88609 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Lmx1bO88609 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms