Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Hmgb3O54879 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Hmgb3O54879 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Gm43213-201ENSMUST00000151866 1790 ntBASIC15.01□□□□□ -0.01
Hmgb3O54879 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Hmgb3O54879 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Hmgb3O54879 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
Hmgb3O54879 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Gm43759-201ENSMUST00000196925 1261 ntBASIC15□□□□□ -0.01
Hmgb3O54879 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
Hmgb3O54879 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Gm7856-201ENSMUST00000117514 1493 ntBASIC15□□□□□ -0.01
Hmgb3O54879 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Hmgb3O54879 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Hmgb3O54879 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Hmgb3O54879 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC14.99□□□□□ -0.01
Hmgb3O54879 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Hmgb3O54879 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Hmgb3O54879 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Hmgb3O54879 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC14.98□□□□□ -0.01
Hmgb3O54879 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Hmgb3O54879 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC14.98□□□□□ -0.01
Hmgb3O54879 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
Hmgb3O54879 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC14.98□□□□□ -0.01
Hmgb3O54879 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC14.98□□□□□ -0.01
Hmgb3O54879 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Hmgb3O54879 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
Hmgb3O54879 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Hmgb3O54879 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
Hmgb3O54879 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC14.97□□□□□ -0.01
Hmgb3O54879 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC14.97□□□□□ -0.01
Hmgb3O54879 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Hmgb3O54879 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
Hmgb3O54879 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC14.97□□□□□ -0.01
Hmgb3O54879 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Hmgb3O54879 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Hmgb3O54879 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Hmgb3O54879 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Hmgb3O54879 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms