Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clk4O35493 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Clk4O35493 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.32■□□□□ 0.36
Clk4O35493 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Clk4O35493 Gm22325-201ENSMUST00000158904 308 ntBASIC17.32■□□□□ 0.36
Clk4O35493 Gm26524-201ENSMUST00000192339 390 ntBASIC17.32■□□□□ 0.36
Clk4O35493 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.32■□□□□ 0.36
Clk4O35493 Rab3c-203ENSMUST00000224180 967 ntBASIC17.32■□□□□ 0.36
Clk4O35493 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.32■□□□□ 0.36
Clk4O35493 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clk4O35493 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clk4O35493 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clk4O35493 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Clk4O35493 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.32■□□□□ 0.36
Clk4O35493 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clk4O35493 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC17.31■□□□□ 0.36
Clk4O35493 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Clk4O35493 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clk4O35493 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Clk4O35493 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clk4O35493 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clk4O35493 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clk4O35493 Gm4968-201ENSMUST00000071458 858 ntBASIC17.3■□□□□ 0.36
Clk4O35493 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clk4O35493 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.3■□□□□ 0.36
Clk4O35493 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Clk4O35493 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clk4O35493 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Clk4O35493 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC17.29■□□□□ 0.36
Clk4O35493 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.29■□□□□ 0.36
Clk4O35493 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.29■□□□□ 0.36
Clk4O35493 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Clk4O35493 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clk4O35493 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Clk4O35493 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.28■□□□□ 0.36
Clk4O35493 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.28■□□□□ 0.36
Clk4O35493 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Clk4O35493 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.28■□□□□ 0.36
Clk4O35493 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.28■□□□□ 0.36
Clk4O35493 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.28■□□□□ 0.36
Clk4O35493 Gm5408-201ENSMUST00000197998 747 ntBASIC17.28■□□□□ 0.36
Clk4O35493 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.28■□□□□ 0.36
Clk4O35493 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clk4O35493 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Clk4O35493 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clk4O35493 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
Clk4O35493 Gm12441-201ENSMUST00000121806 588 ntBASIC17.27■□□□□ 0.36
Clk4O35493 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC17.27■□□□□ 0.36
Clk4O35493 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.27■□□□□ 0.36
Clk4O35493 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clk4O35493 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clk4O35493 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Clk4O35493 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.27■□□□□ 0.35
Clk4O35493 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clk4O35493 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clk4O35493 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clk4O35493 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clk4O35493 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clk4O35493 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Clk4O35493 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Clk4O35493 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Clk4O35493 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms