Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ankub1-201ENSMUST00000099091 2696 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Usp40Q8BWR4 Nxpe4-203ENSMUST00000216998 4871 ntAPPRIS ALT2 TSL 2 BASIC8.83□□□□□ -1
Usp40Q8BWR4 CT025619.1-201ENSMUST00000214294 2331 ntTSL 5 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm10309-201ENSMUST00000095186 2005 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Ehf-202ENSMUST00000111174 1307 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Asb4-201ENSMUST00000043294 3286 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Tnik-211ENSMUST00000161964 3807 ntAPPRIS ALT2 TSL 5 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm7048-201ENSMUST00000199395 1891 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Chm-202ENSMUST00000113388 4749 ntTSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Ggta1-203ENSMUST00000102794 3606 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Chrnb3-201ENSMUST00000060943 4589 ntAPPRIS P4 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm45290-201ENSMUST00000211177 3890 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Olfr701-202ENSMUST00000166880 1444 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm28928-201ENSMUST00000187286 1443 ntTSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Cep85-202ENSMUST00000121566 3748 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Nudt5-201ENSMUST00000026927 4764 ntAPPRIS P1 TSL 3 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm10375-201ENSMUST00000100692 836 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm10377-201ENSMUST00000100695 899 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Trav6-6-201ENSMUST00000103584 344 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Trav6n-5-201ENSMUST00000103611 338 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm3543-201ENSMUST00000111870 899 ntAPPRIS P1 TSL 3 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Taf7l-202ENSMUST00000113223 1155 ntTSL 5 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm5392-201ENSMUST00000122189 789 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm25843-201ENSMUST00000122582 314 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm13029-201ENSMUST00000137283 594 ntTSL 3 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Fam229b-209ENSMUST00000149949 736 ntAPPRIS P1 TSL 3 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm16164-201ENSMUST00000160078 468 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm9027-201ENSMUST00000165914 661 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 1700001F09Rik-201ENSMUST00000178178 884 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Trav6d-7-201ENSMUST00000178650 358 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Trav6n-7-201ENSMUST00000179607 358 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm37867-201ENSMUST00000192066 1059 ntTSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm37784-201ENSMUST00000193233 189 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm43491-201ENSMUST00000197133 784 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Trav6d-6-201ENSMUST00000197754 344 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Iglc3-201ENSMUST00000200235 452 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm44312-201ENSMUST00000203536 469 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm18467-201ENSMUST00000208805 434 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm45488-201ENSMUST00000210747 371 ntTSL 3 BASIC8.83□□□□□ -1
Usp40Q8BWR4 AC159205.4-201ENSMUST00000225964 704 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 AC161453.1-201ENSMUST00000226078 884 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Klrc3-201ENSMUST00000071149 715 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Olfr510-201ENSMUST00000076289 945 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Olfr771-201ENSMUST00000078914 954 ntAPPRIS P1 BASIC8.83□□□□□ -1
Usp40Q8BWR4 2700062C07Rik-201ENSMUST00000097646 1040 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Sorbs2-214ENSMUST00000134675 1692 ntTSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Crtam-202ENSMUST00000180384 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Rdh11-203ENSMUST00000161204 3262 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm18796-201ENSMUST00000190440 1767 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Pira2-201ENSMUST00000108615 3462 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm15922-201ENSMUST00000118068 3462 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Stat4-202ENSMUST00000168302 2662 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Pde1c-202ENSMUST00000114327 6821 ntTSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Gm43488-201ENSMUST00000198874 2504 ntBASIC8.83□□□□□ -1
Usp40Q8BWR4 Dlgap5-208ENSMUST00000180299 4067 ntAPPRIS ALT2 TSL 2 BASIC8.83□□□□□ -1
Usp40Q8BWR4 Ctnna3-202ENSMUST00000105440 3682 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Plce1-203ENSMUST00000182267 7234 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
Usp40Q8BWR4 Mat2a-202ENSMUST00000205335 3387 ntTSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Olfr1288-202ENSMUST00000214816 1326 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Olfr1532-ps1-202ENSMUST00000207492 2414 ntAPPRIS P1 TSL 2 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Smim15-201ENSMUST00000095458 1918 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm7980-201ENSMUST00000168107 1403 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Olfr1112-202ENSMUST00000216772 1443 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Pde10a-208ENSMUST00000115724 3612 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm7982-202ENSMUST00000136313 1536 ntAPPRIS P5 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 C530043A13Rik-202ENSMUST00000188155 1512 ntTSL 2 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm11498-201ENSMUST00000120660 949 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm14603-201ENSMUST00000121275 448 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Znrd1-203ENSMUST00000172823 454 ntTSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Mir6361-201ENSMUST00000185079 101 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm28885-201ENSMUST00000185615 563 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm28934-201ENSMUST00000186491 346 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm8860-201ENSMUST00000193160 445 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm42880-201ENSMUST00000198028 459 ntTSL 3 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm44239-201ENSMUST00000204228 271 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 AC153801.1-201ENSMUST00000217904 947 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 AC155941.1-201ENSMUST00000220223 529 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 AC154646.1-201ENSMUST00000225011 1092 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 AC096628.1-201ENSMUST00000226060 641 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 AC116724.1-201ENSMUST00000227900 972 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 1700007K09Rik-201ENSMUST00000033146 360 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Uqcrh-ps1-201ENSMUST00000038391 270 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Rpgr-201ENSMUST00000044598 3805 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Scgb2b24-201ENSMUST00000055444 523 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Ccdc68-202ENSMUST00000080050 1235 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm25515-201ENSMUST00000083858 157 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 n-R5-8s1-201ENSMUST00000083988 148 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Amot-202ENSMUST00000112836 6957 ntAPPRIS P2 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Crb1-204ENSMUST00000198445 6135 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Cytip-201ENSMUST00000028175 6110 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Cd36-202ENSMUST00000165232 2708 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm6101-201ENSMUST00000195384 1867 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 4930432O09Rik-201ENSMUST00000219710 1986 ntTSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Eif3s6-ps4-201ENSMUST00000202873 1388 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Plch1-213ENSMUST00000177143 6010 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 Zfp280d-203ENSMUST00000183410 4200 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Ccdc175-201ENSMUST00000021494 2622 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
Usp40Q8BWR4 AC126549.1-201ENSMUST00000225044 3687 ntBASIC8.82□□□□□ -1
Usp40Q8BWR4 Gm16568-201ENSMUST00000066038 1910 ntTSL 1 (best) BASIC8.82□□□□□ -1
Usp40Q8BWR4 Trappc2-202ENSMUST00000112194 1418 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 87.1 ms