Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm15433-201ENSMUST00000097671 891 ntBASIC6.31□□□□□ -1.4
Hoxd3P09027 Krtdap-201ENSMUST00000098559 470 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Slfn9-201ENSMUST00000038211 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Aloxe3-201ENSMUST00000021268 3019 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Fam60a-209ENSMUST00000203164 2442 ntTSL 5 BASIC6.31□□□□□ -1.4
Hoxd3P09027 Serpina3f-201ENSMUST00000101080 2207 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Pik3ca-203ENSMUST00000108243 6689 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
Hoxd3P09027 Klrb1b-201ENSMUST00000032472 2228 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Zfp952-201ENSMUST00000087666 2950 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Vcan-206ENSMUST00000159910 8332 ntTSL 5 BASIC6.31□□□□□ -1.4
Hoxd3P09027 E030022I16Rik-201ENSMUST00000215131 2766 ntBASIC6.31□□□□□ -1.4
Hoxd3P09027 Olfr1239-202ENSMUST00000216762 1643 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
Hoxd3P09027 Gm2136-201ENSMUST00000193945 2577 ntBASIC6.31□□□□□ -1.4
Hoxd3P09027 Arpp21-203ENSMUST00000111872 3316 ntTSL 5 BASIC6.31□□□□□ -1.4
Hoxd3P09027 Arpp21-229ENSMUST00000164754 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Ripor2-203ENSMUST00000091694 3142 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 C2cd3-201ENSMUST00000051777 7803 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
Hoxd3P09027 Crb1-204ENSMUST00000198445 6135 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 4933402E13Rik-201ENSMUST00000051414 1970 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Sec23a-204ENSMUST00000165134 2529 ntTSL 5 BASIC6.31□□□□□ -1.4
Hoxd3P09027 Slc12a6-202ENSMUST00000053666 6060 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Prox2-202ENSMUST00000177289 3066 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Sema3d-205ENSMUST00000197927 3207 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Wls-201ENSMUST00000068952 3559 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Hoxd3P09027 Olfr727-202ENSMUST00000215317 2616 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm42759-201ENSMUST00000195915 2439 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Ptpn3-201ENSMUST00000075637 6369 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Mrgprc2-ps-201ENSMUST00000188039 1516 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Sap130-201ENSMUST00000025109 4015 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Drp2-204ENSMUST00000113228 3141 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Mtbp-204ENSMUST00000169667 2570 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Cd36-206ENSMUST00000197890 2564 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 C030015A19Rik-201ENSMUST00000203368 2551 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 CT009530.1-201ENSMUST00000227348 2927 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Neurod1-201ENSMUST00000041099 2729 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Bivm-202ENSMUST00000114709 3570 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Napg-201ENSMUST00000025474 3562 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gc-201ENSMUST00000049209 1801 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Clip4-201ENSMUST00000024854 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gtf3c2-210ENSMUST00000202639 4200 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Arsj-201ENSMUST00000093976 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm17167-201ENSMUST00000169242 5054 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm16487-201ENSMUST00000105048 4037 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm6871-202ENSMUST00000110214 1638 ntAPPRIS P5 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 A430027C01Rik-201ENSMUST00000194599 1644 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm22656-201ENSMUST00000104199 171 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Churc1-202ENSMUST00000110399 535 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm15399-201ENSMUST00000118055 724 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm13458-201ENSMUST00000118239 367 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm12604-201ENSMUST00000118382 380 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm15574-201ENSMUST00000119937 405 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Vmn1r-ps135-201ENSMUST00000120909 595 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm12297-201ENSMUST00000121380 979 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Bambi-ps1-201ENSMUST00000121525 592 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm8540-201ENSMUST00000168952 732 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm17054-201ENSMUST00000169811 259 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm20468-201ENSMUST00000172664 452 ntTSL 3 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Csnk2b-203ENSMUST00000173114 917 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Dxo-208ENSMUST00000174092 738 ntTSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Mir6999-201ENSMUST00000183498 61 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Mir6481-201ENSMUST00000184617 110 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm29464-201ENSMUST00000187692 513 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm7115-201ENSMUST00000193706 832 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm17977-201ENSMUST00000198743 574 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm8930-201ENSMUST00000201693 768 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm3148-201ENSMUST00000203594 612 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm44818-201ENSMUST00000206608 358 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm45368-201ENSMUST00000209323 703 ntTSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm36849-201ENSMUST00000210345 680 ntTSL 2 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Olfr1035-ps1-202ENSMUST00000213364 288 ntTSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 AC155934.1-201ENSMUST00000213802 322 ntTSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm19116-201ENSMUST00000218592 642 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm5173-201ENSMUST00000219616 950 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm8153-201ENSMUST00000219844 952 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm10037-203ENSMUST00000221620 636 ntAPPRIS P5 TSL 3 BASIC6.3□□□□□ -1.4
Hoxd3P09027 AC124712.1-201ENSMUST00000221833 445 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 AC134462.1-201ENSMUST00000223047 552 ntTSL 2 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Rpl7a-ps1-201ENSMUST00000223350 793 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm7086-202ENSMUST00000228849 506 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gsta4-201ENSMUST00000034903 977 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Capsl-201ENSMUST00000042360 949 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Olfr103-201ENSMUST00000058826 942 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Glipr1l1-201ENSMUST00000073617 896 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 6720489N17Rik-201ENSMUST00000091563 318 ntTSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Prl2b1-201ENSMUST00000091678 891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Zscan4b-201ENSMUST00000168158 1754 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Zscan4b-202ENSMUST00000210847 1779 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm8212-201ENSMUST00000166350 1404 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm43219-201ENSMUST00000197972 1937 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Zfp607b-201ENSMUST00000076421 1947 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm13415-201ENSMUST00000131886 3089 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 9930024M15Rik-201ENSMUST00000214902 2584 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm44141-201ENSMUST00000204231 1583 ntBASIC6.3□□□□□ -1.4
Hoxd3P09027 AC132465.2-201ENSMUST00000218673 2728 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Hnf4g-201ENSMUST00000108393 2224 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Atg4a-201ENSMUST00000112971 2202 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm5175-201ENSMUST00000218458 1703 ntTSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Sorbs2-201ENSMUST00000067065 6337 ntTSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Olfr958-202ENSMUST00000215505 3514 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Hoxd3P09027 Gm43790-201ENSMUST00000202694 2013 ntBASIC6.3□□□□□ -1.4
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms