Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Kcnmb2-205ENSMUST00000192429 2357 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
Cux1P53564 Slc17a8-201ENSMUST00000020102 4456 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Cux1P53564 Wdr49-201ENSMUST00000193989 2413 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
Cux1P53564 Cyp1a1-201ENSMUST00000034865 2621 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Cux1P53564 1700057H15Rik-201ENSMUST00000127913 595 ntTSL 3 BASIC9.65□□□□□ -0.86
Cux1P53564 Rian-203ENSMUST00000181527 989 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Cux1P53564 Gm17934-201ENSMUST00000192818 422 ntBASIC9.65□□□□□ -0.86
Cux1P53564 Mir219c-201ENSMUST00000199860 60 ntBASIC9.65□□□□□ -0.86
Cux1P53564 Smim15-202ENSMUST00000223808 808 ntAPPRIS P1 BASIC9.65□□□□□ -0.86
Cux1P53564 AC161884.2-201ENSMUST00000224513 227 ntBASIC9.65□□□□□ -0.86
Cux1P53564 AC154527.1-201ENSMUST00000225809 242 ntBASIC9.65□□□□□ -0.86
Cux1P53564 Tti1-201ENSMUST00000029179 3830 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Cux1P53564 Gm24405-201ENSMUST00000083033 167 ntBASIC9.65□□□□□ -0.86
Cux1P53564 H2-M9-202ENSMUST00000087167 1070 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Cux1P53564 Zfp280d-203ENSMUST00000183410 4200 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.86
Cux1P53564 Foxp2-204ENSMUST00000115472 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
Cux1P53564 Wdr44-201ENSMUST00000035766 4167 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
Cux1P53564 Gm7205-201ENSMUST00000196032 1323 ntBASIC9.65□□□□□ -0.87
Cux1P53564 Rbpj-201ENSMUST00000037618 5459 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
Cux1P53564 Efcab14-201ENSMUST00000074425 4300 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Cux1P53564 Gm884-202ENSMUST00000167262 4576 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Cux1P53564 Trpc4-201ENSMUST00000029311 3473 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
Cux1P53564 Fbxw19-201ENSMUST00000076617 1483 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Cux1P53564 Cep295-203ENSMUST00000098979 7188 ntAPPRIS P2 TSL 5 BASIC9.64□□□□□ -0.87
Cux1P53564 Gm14510-201ENSMUST00000116165 1092 ntBASIC9.64□□□□□ -0.87
Cux1P53564 Gm12040-201ENSMUST00000118357 537 ntBASIC9.64□□□□□ -0.87
Cux1P53564 Gm4911-201ENSMUST00000119388 945 ntBASIC9.64□□□□□ -0.87
Cux1P53564 1700095A21Rik-201ENSMUST00000145269 1069 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Cux1P53564 Gm2012-202ENSMUST00000163263 892 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Cux1P53564 Gm6121-202ENSMUST00000167438 893 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Cux1P53564 Obox3-ps6-201ENSMUST00000176273 1005 ntBASIC9.64□□□□□ -0.87
Cux1P53564 Gm37235-201ENSMUST00000195171 59 ntBASIC9.64□□□□□ -0.87
Cux1P53564 1700094M23Rik-201ENSMUST00000197695 695 ntTSL 5 BASIC9.64□□□□□ -0.87
Cux1P53564 Gm18943-201ENSMUST00000207357 1216 ntBASIC9.64□□□□□ -0.87
Cux1P53564 Gm33037-201ENSMUST00000217927 642 ntTSL 3 BASIC9.64□□□□□ -0.87
Cux1P53564 Gm17728-201ENSMUST00000076982 399 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Cux1P53564 Vmn1r30-201ENSMUST00000078890 1053 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Cux1P53564 Ceacam13-201ENSMUST00000081703 946 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
Cux1P53564 Cntrl-203ENSMUST00000113032 7085 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Cux1P53564 Prkg2-205ENSMUST00000162619 1308 ntTSL 5 BASIC9.64□□□□□ -0.87
Cux1P53564 Zbtb18-202ENSMUST00000094276 4204 ntAPPRIS ALT1 TSL 2 BASIC9.64□□□□□ -0.87
Cux1P53564 Ccp110-201ENSMUST00000038650 4716 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Cux1P53564 Tlr11-202ENSMUST00000185091 3207 ntAPPRIS P2 TSL 2 BASIC9.64□□□□□ -0.87
Cux1P53564 Nek10-206ENSMUST00000224491 9567 ntAPPRIS P2 BASIC9.63□□□□□ -0.87
Cux1P53564 Lrriq1-201ENSMUST00000020043 2542 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 Olfr705-203ENSMUST00000216009 3085 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Cux1P53564 Gm43627-201ENSMUST00000197119 2299 ntBASIC9.63□□□□□ -0.87
Cux1P53564 Atp5l-ps2-201ENSMUST00000121382 314 ntBASIC9.63□□□□□ -0.87
Cux1P53564 Pttg1-206ENSMUST00000121638 948 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 9430098F02Rik-201ENSMUST00000180832 2986 ntTSL 5 BASIC9.63□□□□□ -0.87
Cux1P53564 1700028M03Rik-201ENSMUST00000185938 476 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 Gm42652-201ENSMUST00000199073 614 ntBASIC9.63□□□□□ -0.87
Cux1P53564 Gm8930-201ENSMUST00000201693 768 ntBASIC9.63□□□□□ -0.87
Cux1P53564 Gm18863-201ENSMUST00000217004 1299 ntBASIC9.63□□□□□ -0.87
Cux1P53564 CT009600.1-201ENSMUST00000228771 337 ntBASIC9.63□□□□□ -0.87
Cux1P53564 Gm28392-201ENSMUST00000077630 393 ntBASIC9.63□□□□□ -0.87
Cux1P53564 n-R5s204-201ENSMUST00000082972 119 ntBASIC9.63□□□□□ -0.87
Cux1P53564 n-R5s36-201ENSMUST00000082998 119 ntBASIC9.63□□□□□ -0.87
Cux1P53564 Mir143-201ENSMUST00000083511 63 ntBASIC9.63□□□□□ -0.87
Cux1P53564 Prelp-201ENSMUST00000048432 3615 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 Olfr943-205ENSMUST00000215770 8308 ntAPPRIS ALT2 TSL 2 BASIC9.63□□□□□ -0.87
Cux1P53564 Olfr202-203ENSMUST00000217485 1321 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Cux1P53564 Cdon-201ENSMUST00000042842 7213 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 Ago3-201ENSMUST00000069097 15595 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 5430421F17Rik-202ENSMUST00000210268 2295 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 Gm32122-201ENSMUST00000212119 2259 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 Gm20750-201ENSMUST00000194274 3515 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 Zfp407-202ENSMUST00000125763 7906 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Cux1P53564 Ccdc110-201ENSMUST00000095326 2656 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Cux1P53564 Sec24c-202ENSMUST00000223751 4196 ntBASIC9.63□□□□□ -0.87
Cux1P53564 Mkks-201ENSMUST00000028730 2935 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 Stard9-201ENSMUST00000070420 4874 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 Gm11032-201ENSMUST00000109941 102 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Cux1P53564 Gm13890-201ENSMUST00000117578 390 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Gm6744-201ENSMUST00000119303 543 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Gm15239-201ENSMUST00000150690 603 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 Gm26372-201ENSMUST00000157831 236 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Gm17206-201ENSMUST00000168123 577 ntTSL 5 BASIC9.62□□□□□ -0.87
Cux1P53564 Mirt2-201ENSMUST00000175179 285 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Gm8581-201ENSMUST00000188636 890 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Gm44940-201ENSMUST00000206225 1247 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Gm17988-201ENSMUST00000208796 535 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Gm33242-201ENSMUST00000212130 1057 ntBASIC9.62□□□□□ -0.87
Cux1P53564 AC159622.2-201ENSMUST00000221592 983 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 AC139568.1-201ENSMUST00000222878 486 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Olfr286-201ENSMUST00000073612 3821 ntAPPRIS P1 TSL 3 BASIC9.62□□□□□ -0.87
Cux1P53564 Gm43537-201ENSMUST00000199064 3110 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Gm15097-201ENSMUST00000101180 2029 ntAPPRIS P2 TSL 5 BASIC9.62□□□□□ -0.87
Cux1P53564 Gm15107-201ENSMUST00000112796 2028 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Cux1P53564 Gm15080-201ENSMUST00000112804 2029 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 Ott-201ENSMUST00000177554 2028 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 Ott-202ENSMUST00000177606 2028 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Cux1P53564 Gm15085-201ENSMUST00000178169 2028 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 Ott-203ENSMUST00000179348 2028 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Cux1P53564 Scn11a-202ENSMUST00000215718 5899 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 Pde10a-208ENSMUST00000115724 3612 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Cux1P53564 Gm5930-201ENSMUST00000111863 1746 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Cux1P53564 Gm43019-201ENSMUST00000196948 2863 ntBASIC9.62□□□□□ -0.87
Cux1P53564 Klrb1f-201ENSMUST00000032257 1701 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cux1P53564 Ogfod1-201ENSMUST00000060632 5214 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms