Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 AC122251.2-201ENSMUST00000227341 603 ntBASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Tsga10-201ENSMUST00000041815 3400 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Vmn2r-ps44-201ENSMUST00000174053 2412 ntBASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 St18-208ENSMUST00000140079 5892 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Rasgrp3-201ENSMUST00000095204 4657 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Mnd1-ps-202ENSMUST00000224435 2574 ntBASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Gm12299-201ENSMUST00000138819 2327 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Olfr1391-202ENSMUST00000215671 3235 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Pja2-202ENSMUST00000024889 4345 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Cnpy1-205ENSMUST00000141601 3018 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Gm12763-201ENSMUST00000151344 1939 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Upf3bQ3ULL6 Zscan4e-201ENSMUST00000166753 1722 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Sorbs2-209ENSMUST00000132139 4644 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm40518-202ENSMUST00000214538 4080 ntTSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Dock7-205ENSMUST00000127417 6796 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Vmn1r219-202ENSMUST00000226845 5979 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Vmn1r219-205ENSMUST00000228666 5993 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Rpgr-201ENSMUST00000044598 3805 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm20655-202ENSMUST00000181428 2946 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Nfib-201ENSMUST00000050872 8770 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm17751-201ENSMUST00000189132 2004 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Meis1-208ENSMUST00000177417 5308 ntTSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Spire1-202ENSMUST00000082243 4950 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Olfr1500-205ENSMUST00000216287 2178 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Lifr-204ENSMUST00000226471 3392 ntAPPRIS P3 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm30570-201ENSMUST00000213553 2651 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Cep112-202ENSMUST00000106715 1161 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm22103-201ENSMUST00000116733 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm26475-201ENSMUST00000116769 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm23620-201ENSMUST00000116812 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm25042-201ENSMUST00000116856 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm25540-201ENSMUST00000116880 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm8250-201ENSMUST00000117398 774 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Mup9-202ENSMUST00000118759 909 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm11976-201ENSMUST00000119236 295 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm7571-201ENSMUST00000120252 927 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm11882-201ENSMUST00000121463 506 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Mup9-204ENSMUST00000122381 864 ntAPPRIS P2 TSL 2 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 D830026I12Rik-201ENSMUST00000124434 935 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm11368-201ENSMUST00000139576 609 ntTSL 3 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 4933411O13Rik-203ENSMUST00000146849 607 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm14747-201ENSMUST00000149888 984 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm12148-201ENSMUST00000153791 292 ntTSL 3 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 4930445N08Rik-201ENSMUST00000156925 313 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm23343-201ENSMUST00000158964 143 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 B230118H07Rik-208ENSMUST00000160037 1139 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 G930045G22Rik-202ENSMUST00000161723 673 ntTSL 3 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Obox1-202ENSMUST00000172463 783 ntAPPRIS P1 TSL 3 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm22569-201ENSMUST00000175545 124 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm5885-201ENSMUST00000178578 648 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm23550-201ENSMUST00000179003 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm25123-201ENSMUST00000179154 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm25353-201ENSMUST00000179366 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm22992-201ENSMUST00000179496 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm25892-201ENSMUST00000179867 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm24092-201ENSMUST00000180257 121 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Trav1-202ENSMUST00000185651 329 ntAPPRIS ALT2 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm38177-201ENSMUST00000192213 1040 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 1700034J04Rik-201ENSMUST00000192736 750 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm37770-201ENSMUST00000192855 772 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Csn2-202ENSMUST00000196163 722 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm43057-201ENSMUST00000196789 429 ntTSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm3321-201ENSMUST00000200603 1129 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Mageb16-ps2-201ENSMUST00000204513 1093 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm44712-201ENSMUST00000206250 1076 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Fxyd1-212ENSMUST00000206305 568 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm9535-201ENSMUST00000218499 768 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm18620-201ENSMUST00000222295 324 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 AC105950.1-201ENSMUST00000222637 408 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 AC154517.1-201ENSMUST00000222785 629 ntTSL 3 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 CT009713.1-201ENSMUST00000224828 853 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Vmn1r38-203ENSMUST00000227694 909 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm4792-201ENSMUST00000065826 771 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Mup20-201ENSMUST00000074018 928 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Mup18-201ENSMUST00000098040 930 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Mup11-202ENSMUST00000098046 930 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Mup10-201ENSMUST00000098047 927 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 E030032P16Rik-201ENSMUST00000198813 2931 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Nsun4-206ENSMUST00000165493 3920 ntTSL 2 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Emcn-202ENSMUST00000122064 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 C920009B18Rik-202ENSMUST00000181223 4535 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm43864-201ENSMUST00000204452 4028 ntBASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 AL606496.1-201ENSMUST00000220673 4472 ntTSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Vmn1r220-204ENSMUST00000227950 6238 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Gm31520-202ENSMUST00000203574 1524 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 Olfr1047-202ENSMUST00000216056 2450 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
Upf3bQ3ULL6 A730017L22Rik-201ENSMUST00000128176 3055 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Pou1f1-204ENSMUST00000176330 1310 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Tfb1m-201ENSMUST00000041003 1327 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Poln-205ENSMUST00000202409 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Gm3510-201ENSMUST00000180447 1455 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Gm16325-201ENSMUST00000141199 3174 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Adh7-201ENSMUST00000090171 3432 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Olfr127-202ENSMUST00000217223 3733 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Igsf10-203ENSMUST00000194546 8393 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Xlr3b-201ENSMUST00000101486 1564 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Ighv14-4-201ENSMUST00000103475 333 ntAPPRIS ALT2 BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Sirpb1c-204ENSMUST00000108352 1436 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Gm12169-201ENSMUST00000109228 1065 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
Upf3bQ3ULL6 Gm13400-201ENSMUST00000117436 380 ntBASIC6.8□□□□□ -1.32
Retrieved 100 of 76,532 protein–RNA pairs in 72.3 ms