Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
Prpf40aQ9R1C7 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Prpf40aQ9R1C7 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Gm6211-202ENSMUST00000167849 925 ntBASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.92■□□□□ 0.78
Prpf40aQ9R1C7 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Prpf40aQ9R1C7 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Prpf40aQ9R1C7 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Prpf40aQ9R1C7 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Prpf40aQ9R1C7 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Prpf40aQ9R1C7 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Prpf40aQ9R1C7 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.9■□□□□ 0.78
Prpf40aQ9R1C7 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Prpf40aQ9R1C7 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Prpf40aQ9R1C7 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
Prpf40aQ9R1C7 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Prpf40aQ9R1C7 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.89■□□□□ 0.78
Prpf40aQ9R1C7 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
Prpf40aQ9R1C7 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.89■□□□□ 0.77
Prpf40aQ9R1C7 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Prpf40aQ9R1C7 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Prpf40aQ9R1C7 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Prpf40aQ9R1C7 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Prpf40aQ9R1C7 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Prpf40aQ9R1C7 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Prpf40aQ9R1C7 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Gm10602-201ENSMUST00000098239 609 ntBASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Prpf40aQ9R1C7 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms