Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Lima1Q9ERG0 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Lima1Q9ERG0 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
Lima1Q9ERG0 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Lima1Q9ERG0 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Lima1Q9ERG0 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Lima1Q9ERG0 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Lima1Q9ERG0 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Lima1Q9ERG0 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Lima1Q9ERG0 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.85■□□□□ 0.45
Lima1Q9ERG0 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms