Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Gm2399-201ENSMUST00000104944 225 ntBASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Vps28Q9D1C8 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.56■□□□□ 0.56
Vps28Q9D1C8 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
Vps28Q9D1C8 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Dio3-201ENSMUST00000097228 1449 ntBASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps28Q9D1C8 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps28Q9D1C8 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps28Q9D1C8 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Vps28Q9D1C8 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Vps28Q9D1C8 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Vps28Q9D1C8 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Grk6-206ENSMUST00000224995 2971 ntBASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps28Q9D1C8 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 59 ms