Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Gm13158-201ENSMUST00000122007 736 ntBASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Golph3-205ENSMUST00000228671 2842 ntBASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lig4Q8BTF7 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Gm5643-201ENSMUST00000117081 966 ntBASIC19.19■□□□□ 0.66
Lig4Q8BTF7 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lig4Q8BTF7 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Gm38285-201ENSMUST00000192928 922 ntBASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Lig4Q8BTF7 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lig4Q8BTF7 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Lig4Q8BTF7 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Gm10812-201ENSMUST00000099864 546 ntBASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lig4Q8BTF7 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Lig4Q8BTF7 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.14■□□□□ 0.65
Lig4Q8BTF7 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.14■□□□□ 0.65
Lig4Q8BTF7 Mtag2-201ENSMUST00000058665 714 ntBASIC19.14■□□□□ 0.65
Lig4Q8BTF7 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Lig4Q8BTF7 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Lig4Q8BTF7 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms