Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC23.7■■□□□ 1.39
Trim28Q62318 AC108858.1-201ENSMUST00000228461 1498 ntBASIC23.7■■□□□ 1.38
Trim28Q62318 Gm6627-201ENSMUST00000218299 2386 ntBASIC23.7■■□□□ 1.38
Trim28Q62318 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC23.7■■□□□ 1.38
Trim28Q62318 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim28Q62318 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC23.7■■□□□ 1.38
Trim28Q62318 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC23.7■■□□□ 1.38
Trim28Q62318 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim28Q62318 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim28Q62318 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim28Q62318 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
Trim28Q62318 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim28Q62318 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Trim28Q62318 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Trim28Q62318 Gm11643-201ENSMUST00000119578 864 ntBASIC23.69■■□□□ 1.38
Trim28Q62318 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC23.69■■□□□ 1.38
Trim28Q62318 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC23.69■■□□□ 1.38
Trim28Q62318 Gm20472-201ENSMUST00000174403 1240 ntBASIC23.69■■□□□ 1.38
Trim28Q62318 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC23.69■■□□□ 1.38
Trim28Q62318 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim28Q62318 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC23.68■■□□□ 1.38
Trim28Q62318 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
Trim28Q62318 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC23.68■■□□□ 1.38
Trim28Q62318 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim28Q62318 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Trim28Q62318 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Trim28Q62318 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Trim28Q62318 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
Trim28Q62318 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
Trim28Q62318 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC23.67■■□□□ 1.38
Trim28Q62318 Odf3b-204ENSMUST00000227834 930 ntBASIC23.67■■□□□ 1.38
Trim28Q62318 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim28Q62318 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim28Q62318 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim28Q62318 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC23.67■■□□□ 1.38
Trim28Q62318 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Trim28Q62318 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
Trim28Q62318 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Gm29994-201ENSMUST00000195495 1193 ntBASIC23.66■■□□□ 1.38
Trim28Q62318 Arhgef4-208ENSMUST00000211073 171 ntBASIC23.66■■□□□ 1.38
Trim28Q62318 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Gm38342-201ENSMUST00000195710 2980 ntBASIC23.66■■□□□ 1.38
Trim28Q62318 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim28Q62318 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Trim28Q62318 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC23.65■■□□□ 1.38
Trim28Q62318 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 Gm3375-201ENSMUST00000203929 796 ntBASIC23.65■■□□□ 1.38
Trim28Q62318 AC158538.1-201ENSMUST00000225870 294 ntBASIC23.65■■□□□ 1.38
Trim28Q62318 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 Gm5417-201ENSMUST00000079706 384 ntBASIC23.65■■□□□ 1.38
Trim28Q62318 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim28Q62318 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
Trim28Q62318 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim28Q62318 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim28Q62318 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim28Q62318 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC23.64■■□□□ 1.37
Trim28Q62318 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim28Q62318 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Trim28Q62318 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim28Q62318 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim28Q62318 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim28Q62318 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim28Q62318 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim28Q62318 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Trim28Q62318 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim28Q62318 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Trim28Q62318 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
Trim28Q62318 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Trim28Q62318 AC135963.1-201ENSMUST00000211640 717 ntBASIC23.63■■□□□ 1.37
Trim28Q62318 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim28Q62318 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC23.63■■□□□ 1.37
Trim28Q62318 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim28Q62318 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trim28Q62318 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trim28Q62318 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Trim28Q62318 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
Trim28Q62318 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trim28Q62318 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC23.62■■□□□ 1.37
Trim28Q62318 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trim28Q62318 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC23.62■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms