Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col11a1Q61245 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col11a1Q61245 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.5■□□□□ 0.87
Col11a1Q61245 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col11a1Q61245 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col11a1Q61245 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col11a1Q61245 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
Col11a1Q61245 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Col11a1Q61245 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col11a1Q61245 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col11a1Q61245 AC108858.1-201ENSMUST00000228461 1498 ntBASIC20.5■□□□□ 0.87
Col11a1Q61245 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
Col11a1Q61245 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.49■□□□□ 0.87
Col11a1Q61245 Golph3-202ENSMUST00000226517 2359 ntBASIC20.49■□□□□ 0.87
Col11a1Q61245 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Col11a1Q61245 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.49■□□□□ 0.87
Col11a1Q61245 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.49■□□□□ 0.87
Col11a1Q61245 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col11a1Q61245 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC20.48■□□□□ 0.87
Col11a1Q61245 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC20.48■□□□□ 0.87
Col11a1Q61245 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col11a1Q61245 Gm8258-201ENSMUST00000055593 1449 ntBASIC20.48■□□□□ 0.87
Col11a1Q61245 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col11a1Q61245 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col11a1Q61245 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col11a1Q61245 Gm29518-201ENSMUST00000190858 372 ntBASIC20.48■□□□□ 0.87
Col11a1Q61245 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col11a1Q61245 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col11a1Q61245 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Col11a1Q61245 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col11a1Q61245 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.47■□□□□ 0.87
Col11a1Q61245 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC20.47■□□□□ 0.87
Col11a1Q61245 Gm18669-201ENSMUST00000216049 778 ntBASIC20.47■□□□□ 0.87
Col11a1Q61245 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col11a1Q61245 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col11a1Q61245 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Col11a1Q61245 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col11a1Q61245 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col11a1Q61245 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col11a1Q61245 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC20.46■□□□□ 0.87
Col11a1Q61245 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col11a1Q61245 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Col11a1Q61245 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col11a1Q61245 Mir1668-201ENSMUST00000184114 107 ntBASIC20.46■□□□□ 0.87
Col11a1Q61245 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Col11a1Q61245 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col11a1Q61245 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col11a1Q61245 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.46■□□□□ 0.87
Col11a1Q61245 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Col11a1Q61245 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col11a1Q61245 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.45■□□□□ 0.86
Col11a1Q61245 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col11a1Q61245 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col11a1Q61245 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col11a1Q61245 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col11a1Q61245 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Col11a1Q61245 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Col11a1Q61245 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC20.44■□□□□ 0.86
Col11a1Q61245 Gm44771-201ENSMUST00000206975 626 ntBASIC20.44■□□□□ 0.86
Col11a1Q61245 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Gm7791-201ENSMUST00000219066 539 ntBASIC20.44■□□□□ 0.86
Col11a1Q61245 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC20.44■□□□□ 0.86
Col11a1Q61245 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col11a1Q61245 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC20.44■□□□□ 0.86
Col11a1Q61245 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC20.43■□□□□ 0.86
Col11a1Q61245 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Col11a1Q61245 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.43■□□□□ 0.86
Col11a1Q61245 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Col11a1Q61245 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Gm17808-201ENSMUST00000200859 894 ntBASIC20.43■□□□□ 0.86
Col11a1Q61245 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col11a1Q61245 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms