Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CtcfQ61164 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CtcfQ61164 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CtcfQ61164 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.92■□□□□ 0.78
CtcfQ61164 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CtcfQ61164 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CtcfQ61164 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
CtcfQ61164 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CtcfQ61164 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CtcfQ61164 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CtcfQ61164 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CtcfQ61164 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CtcfQ61164 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CtcfQ61164 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CtcfQ61164 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CtcfQ61164 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CtcfQ61164 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CtcfQ61164 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
CtcfQ61164 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CtcfQ61164 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CtcfQ61164 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.9■□□□□ 0.78
CtcfQ61164 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.9■□□□□ 0.78
CtcfQ61164 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CtcfQ61164 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.9■□□□□ 0.78
CtcfQ61164 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.9■□□□□ 0.78
CtcfQ61164 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CtcfQ61164 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CtcfQ61164 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
CtcfQ61164 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
CtcfQ61164 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.89■□□□□ 0.78
CtcfQ61164 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.89■□□□□ 0.77
CtcfQ61164 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC19.89■□□□□ 0.77
CtcfQ61164 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CtcfQ61164 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CtcfQ61164 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
CtcfQ61164 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CtcfQ61164 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CtcfQ61164 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC19.89■□□□□ 0.77
CtcfQ61164 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CtcfQ61164 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CtcfQ61164 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CtcfQ61164 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CtcfQ61164 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CtcfQ61164 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CtcfQ61164 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CtcfQ61164 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.88■□□□□ 0.77
CtcfQ61164 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CtcfQ61164 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
CtcfQ61164 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CtcfQ61164 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC19.88■□□□□ 0.77
CtcfQ61164 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CtcfQ61164 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CtcfQ61164 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19.87■□□□□ 0.77
CtcfQ61164 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.87■□□□□ 0.77
CtcfQ61164 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CtcfQ61164 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CtcfQ61164 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC19.87■□□□□ 0.77
CtcfQ61164 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CtcfQ61164 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.87■□□□□ 0.77
CtcfQ61164 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CtcfQ61164 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CtcfQ61164 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CtcfQ61164 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CtcfQ61164 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CtcfQ61164 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.86■□□□□ 0.77
CtcfQ61164 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CtcfQ61164 Gm13146-201ENSMUST00000118508 780 ntBASIC19.86■□□□□ 0.77
CtcfQ61164 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CtcfQ61164 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CtcfQ61164 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CtcfQ61164 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CtcfQ61164 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms