Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc88aQ5SNZ0 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc88aQ5SNZ0 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm3375-201ENSMUST00000203929 796 ntBASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ccdc88aQ5SNZ0 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm11539-201ENSMUST00000119837 557 ntBASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm13436-201ENSMUST00000120418 567 ntBASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc88aQ5SNZ0 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Flg-201ENSMUST00000050758 1488 ntBASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm13559-201ENSMUST00000120476 863 ntBASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc88aQ5SNZ0 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc88aQ5SNZ0 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc88aQ5SNZ0 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc88aQ5SNZ0 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc88aQ5SNZ0 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc88aQ5SNZ0 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Ccdc88aQ5SNZ0 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Ccdc88aQ5SNZ0 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc88aQ5SNZ0 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc88aQ5SNZ0 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc88aQ5SNZ0 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc88aQ5SNZ0 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Ccdc88aQ5SNZ0 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm23634-201ENSMUST00000175071 91 ntBASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Mtag2-201ENSMUST00000058665 714 ntBASIC20.88■□□□□ 0.93
Ccdc88aQ5SNZ0 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc88aQ5SNZ0 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms