Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Gm43514-201ENSMUST00000198852 424 ntBASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Col27a1Q5QNQ9 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col27a1Q5QNQ9 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Col27a1Q5QNQ9 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Col27a1Q5QNQ9 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC17.67■□□□□ 0.42
Col27a1Q5QNQ9 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col27a1Q5QNQ9 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col27a1Q5QNQ9 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col27a1Q5QNQ9 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Gm18958-201ENSMUST00000174258 762 ntBASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col27a1Q5QNQ9 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col27a1Q5QNQ9 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col27a1Q5QNQ9 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Col27a1Q5QNQ9 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.64■□□□□ 0.41
Col27a1Q5QNQ9 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col27a1Q5QNQ9 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Col27a1Q5QNQ9 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Gm6443-201ENSMUST00000203599 874 ntBASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Gm7638-201ENSMUST00000121348 967 ntBASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col27a1Q5QNQ9 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col27a1Q5QNQ9 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col27a1Q5QNQ9 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms