Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Gm7889-201ENSMUST00000185591 958 ntBASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3aQ3ULJ3 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Mir2861-201ENSMUST00000175539 82 ntBASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Iqck-206ENSMUST00000208658 2891 ntBASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3aQ3ULJ3 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3aQ3ULJ3 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3aQ3ULJ3 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Upf3aQ3ULJ3 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.08■□□□□ 0.64
Upf3aQ3ULJ3 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.08■□□□□ 0.64
Upf3aQ3ULJ3 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.08■□□□□ 0.64
Upf3aQ3ULJ3 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.08■□□□□ 0.64
Upf3aQ3ULJ3 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3aQ3ULJ3 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3aQ3ULJ3 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3aQ3ULJ3 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3aQ3ULJ3 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3aQ3ULJ3 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3aQ3ULJ3 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3aQ3ULJ3 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3aQ3ULJ3 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3aQ3ULJ3 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3aQ3ULJ3 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
Upf3aQ3ULJ3 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms